Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0217
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.9  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   4.4  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    26   5.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   7.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  DYLYSRRGGWSQPAQGKVTRPGKFGGSGGF 99
           D+   R GG S+  +G     G FGG GGF
Sbjct: 439 DFSTPRTGGGSRGGRGGFGGRGGFGGRGGF 468


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +1

Query: 199  RIHLTSFRKESISEEIFKITETTTNNPLKHEISDSSVSTNGSPTKLRLYTSESTTSMESG 378
            R+     R+E++  ++    + TT NP   E+   S+    +  KLR+   E +   +  
Sbjct: 914  RLKFMEERQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKY 973

Query: 379  FVS 387
              S
Sbjct: 974  LAS 976


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 47  RPRERSPAPG--NLVVRVASPLSLEKRNLSTILQPVPIQA 160
           R  +R+P PG  N++ R  SPL+L K     +   VP+ A
Sbjct: 20  RRLKRNPNPGLRNILCRRYSPLALSKEVTEALKNNVPVVA 59


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 148 SNSSPNKKCFNF*RRRLRIHLTSFRKESISEEIFKITETTTNNPLKHEISDSSVSTNGSP 327
           + SSPN    +  ++   +H  S R+  +   I  +  +      + ++S SS++TN + 
Sbjct: 189 AQSSPNLASLS--KQPSTVHAPSTRQRDLKSSILSLYASP-----RPQVSSSSITTNATY 241

Query: 328 TKLRLYTSESTTSME 372
             L    S STTS +
Sbjct: 242 QNLPSPVSTSTTSSQ 256


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 526 AHPPFASWRNSEEARTDRPFQQL 594
           +HP F  W +S +  T + F+QL
Sbjct: 113 SHPGFGCWLSSVDINTQQSFEQL 135


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 268 TNNPLKHEISDSSVSTNGSPTKLRLYTSESTTSMES 375
           ++NP +  +++ S+ST  SPTK       STTS+ S
Sbjct: 572 SSNPSQASLTEESLSTRSSPTK------PSTTSLRS 601


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 98  SPLSLEKRNLSTILQPVPIQAQTR 169
           S +++++RN + IL   PIQ++TR
Sbjct: 754 SKMTVQRRNAANILHLEPIQSRTR 777


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 31  GGWSQPAQGKVTRPGKFGGSGGF 99
           GG+   + G    PG FGG GGF
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGF 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,206
Number of Sequences: 5004
Number of extensions: 57395
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)