Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0217
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   3.4  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   3.4  
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628...    28   6.0  
06_01_0092 - 775290-775691                                             28   7.9  
01_01_0445 - 3319451-3320035                                           28   7.9  
01_01_0442 - 3310006-3310013,3311762-3312206                           28   7.9  

>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 511 LNRLAAHPPFASWRNSEEARTDRPFQQLRSLNGEWQIVSVNILLKFAL 654
           L+R +   PF SW N  +A  D+    L  LNG    +   + LK  L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 511 LNRLAAHPPFASWRNSEEARTDRPFQQLRSLNGEWQIVSVNILLKFAL 654
           L+R +   PF SW N  +A  D+    L  LNG    +   + LK  L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451


>02_04_0141 +
           20162276-20162285,20162460-20162726,20162734-20162881,
           20163025-20163091,20163878-20163955,20164034-20164039
          Length = 191

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 499 WRYQLNRLAAHPPFASWRNSEEARTD 576
           WR+ L      PP+  WR  EE + +
Sbjct: 80  WRHYLPPTPLSPPYGKWRKEEEGKVE 105


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 569 RASSLLRQLAKGGCAARR 516
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>01_01_0445 - 3319451-3320035
          Length = 194

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 296 AILVLVLTA-LPLN*GYTHPSPPP 364
           AILV +L A    N GYT PSPPP
Sbjct: 8   AILVSLLAAGATANNGYTTPSPPP 31


>01_01_0442 - 3310006-3310013,3311762-3312206
          Length = 150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 296 AILVLVLTA-LPLN*GYTHPSPPP 364
           AILV +L A    N GYT PSPPP
Sbjct: 8   AILVSLLAAGATANNGYTTPSPPP 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,883,613
Number of Sequences: 37544
Number of extensions: 453071
Number of successful extensions: 1519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)