Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0217
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   0.38 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   6.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 265 TTNNPLKHEISDSSVSTN 318
           T N  LK++ISD+ +STN
Sbjct: 438 TKNGRLKYQISDNDISTN 455


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 518 ALQHIPLSPAGVIAKRPAPIALSNSC 595
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 172 ISCLGLNWNGLKDCGKVSFF 113
           I C    W G+K  GKV +F
Sbjct: 218 IMCYFCIWKGVKWTGKVVYF 237


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 172 ISCLGLNWNGLKDCGKVSFF 113
           I C    W G+K  GKV +F
Sbjct: 271 IMCYFCIWKGVKWTGKVVYF 290


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 518 ALQHIPLSPAGVIAKRPAPIALSNSC 595
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,072
Number of Sequences: 438
Number of extensions: 4283
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)