Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0217
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55580.1 68414.m06361 scarecrow transcription factor family p...    32   0.40 
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    31   0.71 
At2g25460.1 68415.m03049 expressed protein                             31   0.93 
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    29   2.2  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    29   2.2  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    28   5.0  
At3g53930.1 68416.m05958 protein kinase family protein contains ...    28   6.6  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   6.6  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   6.6  
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    27   8.7  
At1g08480.1 68414.m00939 expressed protein                             27   8.7  

>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +1

Query: 208 LTSFRKESISEEIFKITETTTNNPLKHEISDSSVSTNGSPTKLRLYTSESTTSMESGFVS 387
           LTSF+  S S E    T TTT NP    I+ SS +T+ S    RL  + +    +S F +
Sbjct: 2   LTSFKSSSSSSE--DATATTTENPPPLCIASSSAATSASHHLRRLLFTAANFVSQSNFTA 59


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 390 TRRTVPRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPT*SPCSTSPFRQLA**RRGP 569
           +R ++PR      +RP  +R+    PS    +    + LP+ +P  + P  Q A  R+ P
Sbjct: 67  SRESLPRPPQNNSLRPQNTRLQRIRPSPLTQLNRPAVPLPSMAPPQSHP--QFA--RQPP 122

Query: 570 HRSPFP-TVAQP 602
           H+ PFP T  QP
Sbjct: 123 HQPPFPQTTQQP 134


>At2g25460.1 68415.m03049 expressed protein
          Length = 423

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 26/99 (26%), Positives = 43/99 (43%)
 Frame = +1

Query: 22  SRRGGWSQPAQGKVTRPGKFGGSGGFPLKLGKTKPFHNPSTRSNSSPNKKCFNF*RRRLR 201
           SRRGG S       + P     SGG    + +T  F +P    +    K  FN+ +RR  
Sbjct: 186 SRRGGGSH--FDSFSSPATASSSGGRS-PVVETGLFSSPDENQSEPGQKAGFNWWKRRRL 242

Query: 202 IHLTSFRKESISEEIFKITETTTNNPLKHEISDSSVSTN 318
               ++R+E   +E+ K T T  +  L+   ++  +  N
Sbjct: 243 SFSMTWRREPREDEVTK-TSTKPSEELEKPATEIPIEAN 280


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 220 RKESISEEIFKITETTTNNPLKHEISDSSVSTNGSPTKLRLYTSE 354
           R++   EE+ K T+ +T N LK  +S     ++GS  +    TSE
Sbjct: 406 RRKLTKEELQKFTKESTENALKELVSSPEEGSSGSEKQAARGTSE 450


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 567 GLFAITPAGERGMCCKAIKLVTPGFSQSRRCKTTASEL*YDSL*GELGTGPPLEER 400
           GL +    G+   CC+A  +++     + RCK  A ++  +S    +GT  PL +R
Sbjct: 442 GLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLFQR 497


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   SPDYLYSRRGGWSQPAQGKVTRPGKFGGSGGF-PLKLGKTKP 126
           +P YL+S + GWS       +  G+   + GF PL  G+T P
Sbjct: 189 TPTYLHSMQKGWSSERVPLRSNGGRSPPNAGFLPLYSGRTVP 230


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
 Frame = +1

Query: 124 PFHNPSTRSNSSPNKKCFNF*RRRLRIHLTSFRKESISEEIFKITETTTNNPLK---HEI 294
           P  +PS+  ++SP K  + F   R    L+  +   +S    +++     N  K   H +
Sbjct: 329 PEGSPSSFKHTSPMKSSYGFSVERREAALSPLKNMDLSSRYSRVSHRAETNNFKFEGHRL 388

Query: 295 SDSSVSTNGSPTKLRLYTS----ESTTSMESGFV 384
           SD S     S    R +++    +S  SM+  +V
Sbjct: 389 SDRSQFKPSSLPDSRSFSTQGRGDSPDSMDQDYV 422


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 491 ENPGVTNLIALQHIPLSPAGVIAKRPAPIALSNS 592
           E P   N + +QH+PL P  +I++    IA   S
Sbjct: 87  ERPSQLNQVQVQHVPLGPPTLISQPNVSIASGTS 120


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 34  GWSQPAQGKVTRPGKFGGSGGFPLK-LGKTKPFHNP 138
           G S PA G       FGGS GF  K LG + P  NP
Sbjct: 88  GNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQSNP 123


>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 97  FPLKLGKTKPFHNPSTRSNSSPNKKCF 177
           F  K+GK   F + S+R +SSP+K+ F
Sbjct: 572 FSKKMGKLSFFGHSSSRGSSSPSKQSF 598


>At1g08480.1 68414.m00939 expressed protein
          Length = 142

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -1

Query: 175 SISCLGLNWNGLKD--CGKVSFFQ 110
           S S +G NWNGLKD    ++SFF+
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFE 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,903
Number of Sequences: 28952
Number of extensions: 329433
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)