Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0216
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.18 
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  31   0.97 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   3.0  
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   29   3.9  
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               29   5.2  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.1  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   9.1  
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    28   9.1  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 37  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 186
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 24/90 (26%), Positives = 39/90 (43%)
 Frame = +3

Query: 129 RT*TRGEAMGSSRQLHGCRRSLFRTGQKPKTYPF*RNSQCETDTMKLIVNWSGKEFLRET 308
           R+ T     G S+Q+     ++F+ G+K       R    +     + V W   E  RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT-----REKALKKGIHLVTVLWV--ESCRET 175

Query: 309 WTRFVEDSFPIVNDQEVMDVFLVANLKPTR 398
             R  E+ FP++   E+    L+  LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 208 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 65
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +3

Query: 33  HPHHRAYLRVRQ*ILQKLGLSYQKRQAQEAPSRT*TRGEAMGSSRQLHGCRRSLFRTGQK 212
           H + R+Y    +   ++LG S   +  +   ++     ++  +S  + GC  SL   GQ 
Sbjct: 19  HRNTRSYRTKSRFSAKRLGKSRNIKNRKSVRTKL---QDSRNNSTAIFGCNMSLLNKGQS 75

Query: 213 PKT---YPF*RNS-QCETDTMKLIVNWSGKE 293
           PK+   +PF R++ QC     +L +  +  E
Sbjct: 76  PKSRRVHPFARHAGQCAESRYRLCLTTTQNE 106


>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 204 GQKPKTYPF*RNSQCETDTMKLIVNWSGKEFLRET----WTRFVED 329
           GQKPK     R  Q  TD MK+  +   KEF  +     W ++ ED
Sbjct: 302 GQKPKMNRLYRKLQKATDVMKVFTSREWKEFGFDVRVIDWNKYFED 347


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 64  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 174
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 64  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 174
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 506 VHAHVGWLHNSDYFVGHVVFFPPKS-VLSEELVAPVGACGFQVGDQEHVHHLLVVYNGEA 330
           V AHVGW+      +G   F PP S  LS+  +A   A G      + + H    +    
Sbjct: 514 VEAHVGWV------MGATDFIPPASPTLSDAELASAAAVGSYGSTPQSIPHF--EHPSHR 565

Query: 329 VLNKTGPSFTQKLF 288
           +L + G  FTQ+L+
Sbjct: 566 LLKENG--FTQQLY 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,883,525
Number of Sequences: 59808
Number of extensions: 576052
Number of successful extensions: 1794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)