Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0216
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.98 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  KYYKNLGCLIKNAKRKKHLVEHEQ 141
           KY  N  C I  A  K H++++++
Sbjct: 70  KYLTNYSCFITCALEKSHIIQNDE 93


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 327 DSFPIVNDQEVMDVFLVANLKPTRPNRCYKFLAQHALRWEEDYVP 461
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 606 SYGRTFTNPSFTSAQTLPKKKKS*LRVLSFQNKRSLH 716
           SYG   TN +   A  +  K  S  ++   +NK+S H
Sbjct: 461 SYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCH 497


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 606 SYGRTFTNPSFTSAQTLPKKKKS*LRVLSFQNKRSLH 716
           SYG   TN +   A  +  K  S  ++   +NK+S H
Sbjct: 461 SYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCH 497


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 606 SYGRTFTNPSFTSAQTLPKKKKS*LRVLSFQNKRSLH 716
           SYG   TN +   A  +  K  S  ++   +NK+S H
Sbjct: 461 SYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCH 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,235
Number of Sequences: 438
Number of extensions: 5478
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)