Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0216
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43245.1 68414.m04985 expressed protein                             31   1.1  
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    29   3.2  
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein...    29   3.2  
At2g12130.1 68415.m01306 hypothetical protein                          29   4.3  
At1g16490.1 68414.m01972 myb family transcription factor (MYB58)...    29   4.3  
At5g35550.1 68418.m04229 myb family transcription factor (MYB123...    28   7.4  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    28   7.4  
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)...    28   7.4  
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro...    28   7.4  
At5g65230.1 68418.m08206 myb family transcription factor (MYB53)...    27   9.8  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 351 QEVMDVFLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMN 506
           QE +D FL  N+ P       + +  H ++++ED  PH  +R+    YV +N
Sbjct: 321 QEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQPH-CLRLHACHYVALN 371


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILI 679
           R+ W N+ KP +  G  S+EEE+I+I
Sbjct: 54  RLRWTNYLKPEIKRGEFSSEEEQIII 79


>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 260

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 664 FFGRVCADVNDGFVKVLPYDPVHKRLERV--GVLAVNVHDWAAAALFSQTN 518
           F G++C   +D  V  L  +P H+ LE +  G+    + D+     F  TN
Sbjct: 201 FKGKLCGSGDDDEVTDLMLNPQHRGLENMIQGLFLARIRDYTKPKWFDSTN 251


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 396 VWVSGWRPGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 286
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At1g16490.1 68414.m01972 myb family transcription factor (MYB58)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 274

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILIE--GSFLSK*KEFAPNAP 727
           R+ W N+ +P V  G  SAEEE+ +I+   SF +K  + A   P
Sbjct: 56  RLRWINYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLP 99


>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 258

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILI 679
           R+ W+N+ +P +  G  S++EEE++I
Sbjct: 56  RLRWKNYLRPGIKRGNISSDEEELII 81


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILI 679
           R+ W N+ KP +  G  S EEE+I+I
Sbjct: 54  RLRWTNYLKPDIKRGEFSYEEEQIII 79


>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
           similar to myb transcription factor GI:3941436 from
           [Arabidopsis thaliana]
          Length = 336

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILI 679
           R+ W N+ KP +  G  S EEE+I+I
Sbjct: 54  RLRWANYLKPDIKRGEFSYEEEQIII 79


>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
           protein similar to HMG2B [Homo sapiens] GI:32335;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 456

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 647 TNSAEEEEILIEGSFLSK*KEFAPNAPLVTG 739
           T  AE+E++ +E   L K KEF PN     G
Sbjct: 85  TRDAEQEKLKVELKKLQKMKEFKPNMTFACG 115


>At5g65230.1 68418.m08206 myb family transcription factor (MYB53)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 310

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 602 RVIWENFYKPIVYIGTNSAEEEEILI 679
           R+ W N+ +P +  G  SAEEEE ++
Sbjct: 54  RLRWTNYLRPDIKRGKFSAEEEETIL 79


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 640 VNDGFVKVLP--YDPVHKRLERVGVLAVNVHDWA 545
           +N+  VK+ P   + V K+L   GVLA++V  WA
Sbjct: 85  LNEASVKLSPALIEEVLKKLSNAGVLALSVFKWA 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,882
Number of Sequences: 28952
Number of extensions: 408114
Number of successful extensions: 1240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)