Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.81 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.6  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 614 PLCVPGICQKTCDATEFDAERLLFRKPGGAQTGEASPQTNSYA 486
           P+  PG C KTC    +D++ +    P      E    T  YA
Sbjct: 97  PVHRPGRCCKTCPGDLYDSDIIQDIVPQNVLDEEEKSSTKHYA 139


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 232 PRIFYSLCYFSVGLS 276
           P I  S+CYF +GL+
Sbjct: 506 PVILTSVCYFMIGLN 520


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 303 FRPRNRPFNRQTDAEITQRIK 241
           FR R+RP +R+TD  ++   K
Sbjct: 61  FRLRSRPGHRKTDNSLSATSK 81


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 383 KLIMKMSGGETDTRKEVVYTDWEQVANFAREI 288
           +++ +M     DT+K+ VY D +++    R I
Sbjct: 21  EIVQEMKDVLGDTKKKPVYNDLQELKYMERVI 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,175
Number of Sequences: 336
Number of extensions: 4311
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)