Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    36   0.008
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    29   0.88 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   2.7  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   4.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   6.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.2  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 390 YDQANYEDVRR*NGYAQRSCLYRLGAGGEFRPRNRPFNRQTDAEITQRIKNARSR 226
           +DQ +++D R    Y + S  Y      +FR RN  F+ +    ITQR  +  SR
Sbjct: 242 FDQGHFQDERDLKKYVRTSRQYSRSPSPDFRTRNHQFHSRDSQPITQRHTDIESR 296


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -2

Query: 291  NRPFNRQTDAEITQRIKNARSRKLF*ISFLVQGPGITSPIIAAHPLD-HGKPTGPNHRFA 115
            N+  N  ++  + +R++  +SR +   +       I+S   + +PLD     + PN R  
Sbjct: 1017 NQDINNTSNGSLFKRLRYLKSRIIDLNTQYNVRESISSLCSSIYPLDIKTVDSSPNKRLD 1076

Query: 114  RGSSGVSSLEEFLQTKKKKPKNALTPVAG 28
             G+SG +   +F+     K      PV+G
Sbjct: 1077 YGNSGFAHEVQFINVGAFKGSQETEPVSG 1105


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 163 PPT*PRETNRAKPPVCPGVKRGFFP*RIPPNQEEKA 56
           PP  P   NR KPP+  G      P   PP +   A
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 539 KPGGAQTGEASPQTNSYARKFLMNSQWRPD 450
           KP G QT   +PQ   +  K      W PD
Sbjct: 82  KPVGVQTENINPQEKKFGYKTAKQLDWSPD 111


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 69  WFGGILQGKKPRLTPGQTGGLARLVSRGQVGGPQL*GRLFPGPGQGRKF 215
           ++GG L+GKKP    G  G +    + G V G  L G  F G   GRKF
Sbjct: 74  YWGG-LEGKKPHYPSGIHGLVNAAANIGNVFGQILFG--FMGDFFGRKF 119


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 467 SSSETSARSCWSVETLLRF 523
           S+ ETS R CWS+  L  F
Sbjct: 481 STEETSIRICWSLRVLASF 499


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 351 GYAQRSC-LYRLGAGGEFRPRNRPFNRQT 268
           G+   SC L R+ +   FRP  R FNR+T
Sbjct: 454 GFINLSCFLLRISSTPNFRPTFRYFNRRT 482


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 155 SGWAAIIGEVIPGPWTRKEI*NNFLDRAFFILCVISASVCRLNGRFLGRNSPPAPNR 325
           +G   +IG  +     ++E+ NN     + IL +I+  +  +NG F+  + P  P++
Sbjct: 185 NGLGGLIGGSMSYGLYKRELENNLTMSPWRILFIITGLITIINGVFIFIHIPDEPSK 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,712
Number of Sequences: 5004
Number of extensions: 68626
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)