Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1022 - 8815675-8816809,8819696-8819907                           29   4.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   6.4  
12_02_0144 + 14364255-14364881,14364898-14364957                       28   8.5  
11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384           28   8.5  

>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 230 DRAFFILCVISASVCRLNGRFLGRNSPPAPNRYRQLLCAYPFHRLTSS 373
           ++A  ++C+++A+   L  R + R +   P++Y     A+P H +T S
Sbjct: 159 NQAQSLICLLTAAAADLPHRLVYRGTGAYPDKYNYWRYAFPSHGVTVS 206


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 205 PCPGPGNNLPYNCGPPT*PRETNRAKPPVCPGVKRG 98
           P P PG       GPP  P +   ++PP  PGV  G
Sbjct: 366 PPPPPGGK---KGGPPPPPPKGGASRPPAAPGVPTG 398


>12_02_0144 + 14364255-14364881,14364898-14364957
          Length = 228

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
 Frame = -2

Query: 531 WRANRRSVSTDQQLRAEVSDELAMASRSLRGHCRGAALPT---LSLVRSFYDQANYEDVR 361
           W    R  S +  L      E +  S ++    R A +P    L LV    DQ   ED++
Sbjct: 71  WNEGMRLPSIEDCLGCSNIAESSSRSYNMGNRLRQARVPVHQRLGLVNQDCDQGGDEDIK 130

Query: 360 R*NGYAQRSCLYRLGAGGEFRPRNRPFNRQTDAEITQRIKNARSRK 223
             N +       +       R RNR   ++ + EI  R+K  + R+
Sbjct: 131 --NQWCPSGIFTKNQKRRVQRLRNRERFQEVEQEINHRLKKTKPRQ 174


>11_02_0127 + 8595878-8595952,8596265-8596687,8596980-8597384
          Length = 300

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 2   PGLQEIPLFPATGVKAFFGFFFLVWRNSSR-EETPLDPRANRWFGP 136
           PG     LFP   V  F   F L+W +  R E+  LD      +GP
Sbjct: 139 PGSFYTRLFPCNSVHIFHSSFSLMWLSQGRVEKEKLDSFNRPMYGP 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,494,287
Number of Sequences: 37544
Number of extensions: 526449
Number of successful extensions: 1512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)