Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     30   1.6  
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   29   3.8  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               29   3.8  
SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 659  LCPCGHWCFYSLWSLPLCVPGICQKTCDATEFD 561
            LCP GH+C     +   C PG  + T  A  FD
Sbjct: 2649 LCPVGHYCVEGTQTPEQCQPGTFRNTTGAAAFD 2681


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 656  CPCGHWCFYSLWSLPLCVPGICQKT 582
            CP   WC Y  W + +C+P +C  +
Sbjct: 2153 CPTFQWC-YDAWRMHVCLPRLCDSS 2176


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 IIGEVIPGPWTRKEI*NNFLDRAFFILCVISASVC-RLNGR 289
           I+G   P P   + I  NF+  ++FI  V+SA  C R+ GR
Sbjct: 121 ILGRTFPDPELERIIKKNFVHVSYFIGTVLSAEDCRRVKGR 161


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 101  PLDPRANRWFGPVGFPWSSGWAAIIGEVIPGPWTR 205
            P+    +R FGPVG   ++G AA++    PGP  R
Sbjct: 2489 PVMHAVHRPFGPVGGQMNAGHAAMVNPRFPGPIQR 2523


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 114  GQTGGLARLVSRGQVGGPQL*GRLFPGPGQGRKFKIIFLTAH 239
            G TG   RL+ +  VGGP        GPG+G   ++   T H
Sbjct: 2072 GTTGRPRRLLPQAPVGGPVTVSVTATGPGRGPIVRVTTTTVH 2113


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 114 GQTGGLARLVSRGQVGGPQL*GRLFPGPGQGRKFKIIFLTAH 239
           G TG   RL+ +  VGGP        GPG+G   ++   T H
Sbjct: 726 GTTGRPRRLLPQAPVGGPVTVSVTATGPGRGPIVRVTTTTVH 767


>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 141 PTGPNHRFARGSSGVSSLEEFLQTKKKKPKNALTP 37
           P  PN R A   +G S L +FLQ  + + K +  P
Sbjct: 555 PENPNRRLANKGTGGSDLVKFLQRVRDETKESKLP 589


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 452 DRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKE-VVYTDWEQVANF 300
           ++C      +   RY W++++  + +MK  G + + RK+ +    WEQ   F
Sbjct: 483 EKCKSTCTIITLARYEWFEQWENERVMK-RGADYELRKQRIGKRMWEQTCRF 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,094,119
Number of Sequences: 59808
Number of extensions: 569086
Number of successful extensions: 1525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)