Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0215
(718 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118340-1|AAM48369.1| 638|Drosophila melanogaster LD44182p pro... 30 3.6
AE014296-1669|AAF50260.2| 783|Drosophila melanogaster CG32043-P... 30 3.6
AE014296-1668|AAF50261.2| 783|Drosophila melanogaster CG32043-P... 30 3.6
AE014297-3344|AAF56150.2| 694|Drosophila melanogaster CG16723-P... 29 6.3
AE013599-399|AAM68891.2| 409|Drosophila melanogaster CG11112-PB... 29 6.3
U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin pro... 29 8.4
AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a... 29 8.4
AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin s... 29 8.4
AF017025-1|AAD01611.1| 272|Drosophila melanogaster presenilin p... 29 8.4
AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-P... 29 8.4
AE014134-2280|AAF53244.2| 191|Drosophila melanogaster CG16978-P... 29 8.4
>AY118340-1|AAM48369.1| 638|Drosophila melanogaster LD44182p
protein.
Length = 638
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 700 FPNVHGIEDPQWENYARVVIGASIRYGHYHSA 605
FPN PQ EN + V G+S+ HY SA
Sbjct: 78 FPNYEATTTPQRENSSSVNSGSSVNPAHYASA 109
>AE014296-1669|AAF50260.2| 783|Drosophila melanogaster CG32043-PB,
isoform B protein.
Length = 783
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 700 FPNVHGIEDPQWENYARVVIGASIRYGHYHSA 605
FPN PQ EN + V G+S+ HY SA
Sbjct: 78 FPNYEATTTPQRENSSSVNSGSSVNPAHYASA 109
>AE014296-1668|AAF50261.2| 783|Drosophila melanogaster CG32043-PA,
isoform A protein.
Length = 783
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 700 FPNVHGIEDPQWENYARVVIGASIRYGHYHSA 605
FPN PQ EN + V G+S+ HY SA
Sbjct: 78 FPNYEATTTPQRENSSSVNSGSSVNPAHYASA 109
>AE014297-3344|AAF56150.2| 694|Drosophila melanogaster CG16723-PA
protein.
Length = 694
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 236 AFFILCVISASVCRLNGRFLGRNSPPAPNR 325
++ + +I A +C + GR PPAPN+
Sbjct: 632 SYILYLIIEAPLCGFDSILRGRKDPPAPNK 661
>AE013599-399|AAM68891.2| 409|Drosophila melanogaster CG11112-PB,
isoform B protein.
Length = 409
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 205 PCPGPGNNLPYNCGPPT*PRETNRAKPPVC-PG 110
PC PG LP C PP P + PP+C PG
Sbjct: 325 PCKEPGCTLPPTCWPPYCP---SPCTPPMCIPG 354
>U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin
protein.
Length = 527
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 TSDNVGNAAPRQ*PRSDRDAIASSSETSA-RSCWSVETLLRFARHQV 538
+ GN+ PRQ R D +A+ +E + WS R AR Q+
Sbjct: 360 SGQRTGNSHPRQNQRDDGSVLATEAEAAGFTQEWSANLSERVARRQI 406
>AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a1
protein.
Length = 527
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 TSDNVGNAAPRQ*PRSDRDAIASSSETSA-RSCWSVETLLRFARHQV 538
+ GN+ PRQ R D +A+ +E + WS R AR Q+
Sbjct: 360 SGQRTGNSHPRQNQRDDGSVLATEAEAAGFTQEWSANLSERVARRQI 406
>AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin
short form protein.
Length = 527
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 TSDNVGNAAPRQ*PRSDRDAIASSSETSA-RSCWSVETLLRFARHQV 538
+ GN+ PRQ R D +A+ +E + WS R AR Q+
Sbjct: 360 SGQRTGNSHPRQNQRDDGSVLATEAEAAGFTQEWSANLSERVARRQI 406
>AF017025-1|AAD01611.1| 272|Drosophila melanogaster presenilin
protein.
Length = 272
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 TSDNVGNAAPRQ*PRSDRDAIASSSETSA-RSCWSVETLLRFARHQV 538
+ GN+ PRQ R D +A+ +E + WS R AR Q+
Sbjct: 105 SGQRTGNSHPRQNQRDDGSVLATEAEAAGFTQEWSANLSERVARRQI 151
>AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-PB,
isoform B protein.
Length = 527
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 TSDNVGNAAPRQ*PRSDRDAIASSSETSA-RSCWSVETLLRFARHQV 538
+ GN+ PRQ R D +A+ +E + WS R AR Q+
Sbjct: 360 SGQRTGNSHPRQNQRDDGSVLATEAEAAGFTQEWSANLSERVARRQI 406
>AE014134-2280|AAF53244.2| 191|Drosophila melanogaster CG16978-PA
protein.
Length = 191
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 213 ISFLVQGPGITSPIIAAHPLDHGK-PTGPNHRFARGSSGVSSLEEFL 76
IS L+ I + +IA HP D + P G N SG +S EEF+
Sbjct: 101 ISLLLLFGIICAALIAGHPHDLIEDPEGTNDALEESGSGYNSAEEFM 147
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,180,359
Number of Sequences: 53049
Number of extensions: 848588
Number of successful extensions: 2404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2404
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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