Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0215
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 29 3.3
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.3
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.3
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 29 3.3
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 29 4.4
Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 5.8
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 28 7.7
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 7.7
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1898 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1938
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1910 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1950
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1796 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1836
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1797 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1837
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1879 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1919
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1898 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1938
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1910 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1950
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1796 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1836
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1797 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1837
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1879 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1919
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1910 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1950
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1910 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1950
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 512 LLRFARHQVYGIKGARHRIQSRRMFFDKFLERRVVVTIANR 634
L + RH ++ I+G R+ S+ + F++ +E V++ A R
Sbjct: 1910 LTKRVRHSIFNIRGIRNTETSQNLSFNEAVEAGVIIPNAER 1950
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Frame = -3
Query: 671 TMGKLCPCGHWCFYSLWSLPLC-----VPGICQKTC--DATEF 564
TM L CG WC S PLC + G C+K+C D+ E+
Sbjct: 252 TMNYLTLCGAWCMVS--EAPLCNTSWYMDGDCKKSCGGDSAEY 292
>Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical
protein T01C3.8 protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 138 TGPNHRFARGSSGVSSLEEFLQTKKKKPKNALTPVAGKSGISCSPG 1
+GPNH F G + S++ F +K P+ + GK S G
Sbjct: 108 SGPNHEFYYGQPILHSIDRFRSHRKPFPRCIIITTDGKRSKSVMRG 153
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 181 LPYNCGPPT*PRETNRAKPPVCPGVK 104
LP CGPP P T PP PGV+
Sbjct: 262 LPGQCGPPGPPGYTPPPGPPGTPGVQ 287
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -3
Query: 656 CPCGHWCFY-SLWSLPLCVPGICQKTCD 576
CP HWC S S +C PG C+
Sbjct: 877 CPLNHWCHIGSDLSTTVCCPGASTNACN 904
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -3
Query: 656 CPCGHWCFY-SLWSLPLCVPGICQKTCD 576
CP HWC S S +C PG C+
Sbjct: 1295 CPLNHWCHIGSDLSTTVCCPGASTNACN 1322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,295
Number of Sequences: 27780
Number of extensions: 419121
Number of successful extensions: 1146
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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