Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 599 LERRVVVT-IANRSTNDHTGIIFPLWVFNA--VHIGE 700
           L R+VVV+ +AN    DH G++ P+ + N+  VH+ +
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQ 251



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 437 IAGALRYPRYRWYDRFMIKLIMKMSGGET 351
           +A A   P YRWY +   + ++ +SG  T
Sbjct: 260 VAQACPTPEYRWYAQTGSEPMLVLSGPRT 288


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 599 LERRVVVT-IANRSTNDHTGIIFPLWVFNA--VHIGE 700
           L R+VVV+ +AN    DH G++ P+ + N+  VH+ +
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQ 251



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 437 IAGALRYPRYRWYDRFMIKLIMKMSGGET 351
           +A A   P YRWY +   + ++ +SG  T
Sbjct: 260 VAQACPTPEYRWYAQTGSEPMLVLSGPRT 288


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 238 IFYSLCYFSVGLSVKW 285
           + + +CYF +   VKW
Sbjct: 215 VVWIMCYFCIWKGVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 238 IFYSLCYFSVGLSVKW 285
           + + +CYF +   VKW
Sbjct: 268 VVWIMCYFCIWKGVKW 283


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 611 LCVPGICQKTCDATEFDA 558
           +CVP I  K CD  + D+
Sbjct: 36  ICVPEIYSKECDEMKKDS 53


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 611 LCVPGICQKTCDATEFDA 558
           +CVP I  K CD  + D+
Sbjct: 36  ICVPEIYSKECDEMKKDS 53


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 611 LCVPGICQKTCDATEFDA 558
           +CVP I  K CD  + D+
Sbjct: 36  ICVPEIYSKECDEMKKDS 53


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 329 YTDWEQVAN 303
           YTDWE+V N
Sbjct: 431 YTDWEEVYN 439


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 329 YTDWEQVAN 303
           YTDWE+V N
Sbjct: 431 YTDWEEVYN 439


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 214 NFLPCPGPGNNLPYNCGP 161
           + L  PG  N + YNC P
Sbjct: 198 DLLGVPGKRNEIYYNCCP 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,295
Number of Sequences: 438
Number of extensions: 5609
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)