Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0215
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    29   4.1  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    28   5.4  
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...    28   5.4  
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...    28   5.4  
At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51 si...    28   7.1  
At2g16050.1 68415.m01840 DC1 domain-containing protein contains ...    28   7.1  
At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogen...    27   9.4  
At1g79070.1 68414.m09219 SNARE-associated protein-related contai...    27   9.4  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -1

Query: 205 PCPGPGNNLP--YNCGPPT*PRETNRAKPP 122
           P PG G   P  YN  PP  P  TN A PP
Sbjct: 155 PIPGQGGGPPPNYNGLPPPPPYHTNPAAPP 184


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 213 ISFLVQGPGITSPIIAAHPLDHGKPTGPNHRFARGSSGVSSLEEFLQTKKKKPKNALTPV 34
           +S L  GP    P+IA+ P +  +  GP    + G S ++     +      P N   PV
Sbjct: 806 VSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPV 865

Query: 33  AGKS 22
           AG S
Sbjct: 866 AGTS 869


>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  SRLQESKHFLAFSSWFGGILQGKKPRLTPG 116
           S+ Q +    + SSWFGG+   KK  + PG
Sbjct: 192 SQNQNTASSSSSSSWFGGLFDKKKEEVQPG 221


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 27  SRLQESKHFLAFSSWFGGILQGKKPRLTPG 116
           S+ Q +    + SSWFGG+   KK  + PG
Sbjct: 192 SQNQNTASSSSSSSWFGGLFDKKKEEVQPG 221


>At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51
           similar to arabinoxylan arabinofuranohydrolase isoenzyme
           AXAH-II from GI:13398414 [Hordeum vulgare]
          Length = 678

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 168 AAHPLDHGKPTGPNHRFARGSSGVSSLEEFLQTKKKKPK 52
           ++HPLDH       H +   S+  S   +F +T +K PK
Sbjct: 422 SSHPLDHPADYYDYHIYTSASNLFSMYHQFDRTSRKGPK 460


>At2g16050.1 68415.m01840 DC1 domain-containing protein contains
           Pfam domain PF03107: DC1 domain
          Length = 167

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 447 LRGHCRGAALPTLSLVRSFYDQANYEDVRR*NGYAQRSC 331
           L  HC   ALP+ S+   FY +  ++ V R  G  +R C
Sbjct: 53  LHAHC---ALPSASITHPFYKKCTFQFVARPPGNERRYC 88


>At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           zeta-crystallin / quinone reductase (NADPH) - Mus
           musculus, PIR:A54932; contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 348

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 144 KPTGPNHRFARGSSGV-SSLEEFLQTKKKKPKNAL-TPVAGK 25
           K  G +H    G+  V SS++EF++T+K K  + L  PV GK
Sbjct: 192 KSMGVDHVVDLGTENVISSVKEFIKTRKLKGVDVLYDPVGGK 233


>At1g79070.1 68414.m09219 SNARE-associated protein-related contains
           weak similarity to SNARE-associated protein snapin [Mus
           musculus] gi|4206090|gb|AAD11418
          Length = 138

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 595 FVKKHATRLNSMPSAFYSVNLVARKPEKRL 506
           F+ +HA+R++S+     S+NLV +  ++R+
Sbjct: 88  FIVQHASRISSVKQRVSSLNLVLKSVQRRI 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,130
Number of Sequences: 28952
Number of extensions: 397084
Number of successful extensions: 1045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)