Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0214
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   1.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   1.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 DLYTRENVALNNAHNNQLIHRTQP*NREQPNFDN 248
           D    +N   N  HNN++ HR     +E+P +++
Sbjct: 28  DCDKNQNTEQNYTHNNEMYHRV----KEEPIYES 57


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 DLYTRENVALNNAHNNQLIHRTQP*NREQPNFDN 248
           D    +N   N  HNN++ HR     +E+P +++
Sbjct: 28  DCDKNQNTEQNYTHNNEMYHRV----KEEPIYES 57


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 231 QPNFDNKHKNTKKITFFFLFDLT*KVLV*ANGFNE 335
           +PN D    N KK     L +   K LV   G+NE
Sbjct: 69  EPNLDVNQGNLKKFNALKLKNPNLKTLVAIGGWNE 103


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 295 KSNKKKNVIFLVFLCLLSKFGCSRFYGCVLC 203
           K ++ K+++ +V   +++ F C      VLC
Sbjct: 57  KISETKSIVAMVMGTIVNAFSCYTVLAPVLC 87


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 104 DYNYTTSRLGNELPRSVYQRK 166
           DY Y    +G E P  +  R+
Sbjct: 70  DYPYENGHMGAEFPLDIMMRR 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,168
Number of Sequences: 336
Number of extensions: 2634
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)