Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0214
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   6.6  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   6.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.7  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 611 TPTRSK*RSPTRSPLKCQYQTLTKSSRKSLTPS 513
           +P  S+  SPTR P   ++QTL  S   S+  S
Sbjct: 199 SPVSSRTPSPTRFPKHARFQTLNSSDSASIYSS 231


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 127 SRKRTPEICIPEKTSP*IMLTT 192
           SRK+TPEI  P    P +  TT
Sbjct: 149 SRKKTPEIAAPANIEPEVAPTT 170


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 226 RFYGCVLCINWL 191
           RFYG +LCI WL
Sbjct: 62  RFYGTLLCICWL 73


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 65  INNKHVKANKVITDYNYTTSRLGNELPRSVYQRKRRLK 178
           INN   + N+++ DYN     L   L  SV+   + L+
Sbjct: 546 INNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLE 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,678
Number of Sequences: 5004
Number of extensions: 40874
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)