Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0214
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1156 - 24416835-24417461 30 1.3
05_04_0126 + 18252594-18256922 30 1.7
07_01_1099 - 10090498-10090509,10090800-10091739,10093599-10093633 29 2.2
07_01_0483 + 3633010-3633203,3633652-3633957,3634598-3634821,363... 29 2.2
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 29 2.9
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 28 5.1
05_03_0040 - 7646525-7647775 27 8.9
05_03_0039 - 7621613-7622695 27 8.9
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 27 8.9
>07_03_1156 - 24416835-24417461
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 547 LRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVP 398
L H+E P H VP K + P+P E +P +E P+PV +P
Sbjct: 54 LPKHEEPPPHPHPAVPELPKPELPPPHPAVPE--LPKHEEPPHPVVPELP 101
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 180 NAHNNQLIH-RTQP*NREQPNFDNKHKNTKKITFFFLFDLT 299
NAHN +LIH RTQ +++P N KK FF +F T
Sbjct: 1402 NAHNKKLIHKRTQV--QDEPKGGPTLANKKKSAFFSIFPST 1440
>07_01_1099 - 10090498-10090509,10090800-10091739,10093599-10093633
Length = 328
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 505 VPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVPIYFKK 383
+PY+++V + PV + +PL K PV Y + K
Sbjct: 157 IPYKIRVVLHIDIPVIGRISIPLEKNGEIPVPYRPDVNVSK 197
>07_01_0483 +
3633010-3633203,3633652-3633957,3634598-3634821,
3635722-3635825,3636528-3636662,3637537-3637705,
3638074-3638209,3639200-3639338,3640487-3640663,
3640874-3641041,3641363-3641458,3642217-3642345,
3642439-3642669
Length = 735
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 514 REKVPYEVKVPIDK-PYPVYKEVQVPLVKEVPYPVKYHVP 398
RE+ + KVP K PY + K Q +V P V YH P
Sbjct: 288 REQASHRTKVPFVKVPYKLCKPFQSGMVPTGPVEVMYHRP 327
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 217 GCVLCINWLL*ALFKATFSLVYRSREFVSETRSCVVIICYYFVSFYMLVI 68
GC+ C L F T ++ Y S + CV+++ + V+F +LV+
Sbjct: 356 GCLFCGPLFLTFCFLNTVAIAYNSTAALPFGTICVIVLIWTLVTFPLLVL 405
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 274 VIFLVFLCLLSKFGCSRFYGCVLCINWLL*ALF 176
VI L ++ L +K+G +F G V+C+ ++ +F
Sbjct: 115 VILLTWVFLKTKYGLRKFIGVVICVAGIILVVF 147
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -3
Query: 589 EALPGPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYP 416
E LP P KP P + E P V P KP P + P + PYP
Sbjct: 51 EKLPEPEPKPKPKPHPKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKPEPKPEPKPYP 108
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 553 KPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYP 416
KP + +P H + P P KPYP K P +K P P
Sbjct: 59 KPKPKPKPHPKHESKPEPKPEPKPEPKPYPEPKPETKPELKPEPKP 104
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = -3
Query: 613 QPLQGQSREALPGPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLV 434
+P E P P KP + P H+ E P P KP P K P
Sbjct: 111 EPKPEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEPEPKPYPKPKPEPKPGPKPEP 170
Query: 433 KEVPYP 416
K P P
Sbjct: 171 KPEPKP 176
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/67 (26%), Positives = 25/67 (37%)
Frame = -3
Query: 613 QPLQGQSREALPGPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLV 434
+P+ + P P KP + +P+ E P P KPYP K P
Sbjct: 277 KPIPHPGPKPKPKPDPKLEPKPHPEPKPHPMPEPEPKPKPEPKPEPKPYPEPKPKLKPEP 336
Query: 433 KEVPYPV 413
K P P+
Sbjct: 337 KPGPKPI 343
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 217 GCVLCINWLL*ALFKATFSLVYRSREFVSETRSCVVIICYYFVSFYMLVI 68
GC+ C L F T ++ Y + + CV+++ + V+F +LV+
Sbjct: 369 GCLFCGPLFLTFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTFPLLVL 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,611
Number of Sequences: 37544
Number of extensions: 244600
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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