Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0214
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 33 0.18
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 32 0.42
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072) 31 0.74
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 29 2.3
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12) 29 4.0
SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12) 29 4.0
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 5.2
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_35852| Best HMM Match : Collagen (HMM E-Value=0.18) 28 5.2
SB_59481| Best HMM Match : Exc (HMM E-Value=5.1) 28 6.9
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 6.9
SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038) 28 6.9
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 28 6.9
SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4) 27 9.1
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 27 9.1
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 523 LHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVPIY 392
+H P+ V+VP+ P+ V V+VP+ VP P+ H P+Y
Sbjct: 207 IHHHHHHPFPVRVPVRVPFRV--PVRVPVPVRVPVPI--HSPVY 246
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 553 KPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVPI 395
+P E P+ + E P + + PI K P K+ + P+ K+ P P K P+
Sbjct: 232 EPKAKKSEGPIKKDEPKPKKSEGPIKKDEPKAKKSEGPMKKDEPKPKKSEGPM 284
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 553 KPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVPI 395
+P E P+ + E + + P+ K P K+ + P+ K+ P P K PI
Sbjct: 204 EPKAKKSEGPMKKDEPKAKKSEGPMKKDEPKAKKSEGPIKKDEPKPKKSEGPI 256
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 577 GPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVP 398
GP KP +S E P+ + E + + P+ K P K+ + P+ K+ P P K P
Sbjct: 240 GPIKKDEPKPKKS--EGPIKKDEPKAKKSEGPMKKDEPKPKKSEGPMKKDEPKPKKSEGP 297
Query: 397 I 395
+
Sbjct: 298 M 298
>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
Length = 399
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 508 KVPYEVKVPIDKPYPVYKEVQVPLVKEVPY--PVKYHVPIYFK 386
KV KVP++ +PV +V V V Y PV Y VP+ +K
Sbjct: 111 KVSVNYKVPVNYKFPVNYKVSVNYKVPVNYKVPVNYKVPVNYK 153
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 508 KVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVK--YHVPIYFK 386
KVP KVP++ +PV +V V V Y V Y VP+ +K
Sbjct: 141 KVPVNYKVPVNYKFPVNYKVSVNYKFIVNYKVSVNYKVPLNYK 183
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 508 KVPYEVKVPIDKPYPVYKEVQVPLVKEVPY--PVKYHVPIYFK 386
KVP KVP++ V +V V V Y PV Y P+ +K
Sbjct: 87 KVPVNYKVPVNYKVSVNYKVPVNYKVSVNYKVPVNYKFPVNYK 129
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 222 FMVVFCVLIGCCEHYL 175
FM+V+C+++GCC YL
Sbjct: 3 FMLVWCIVVGCCMAYL 18
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 487 VPIDKPYPVYKEVQVPLVKEVPYPVKYHVPIY 392
+P+++P P + PL+ E P P H+P +
Sbjct: 510 LPLERPVPAVTRLPTPLLLERPVPAVTHLPAH 541
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 487 VPIDKPYPVYKEVQVPLVKEVPYPVKYHVP 398
+P+++P P + PL E P P H+P
Sbjct: 478 LPLERPVPAVTRLPTPLPLERPVPAVTHLP 507
>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
Length = 1108
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 532 ENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVK 410
E + +KVP EVKVP + P EV+VP +VP VK
Sbjct: 980 EGKVPNEDKVPDEVKVPDEDKVP--DEVKVPDEFKVPDEVK 1018
>SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 532 ENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVK 410
E + +KVP EVKVP + P EV+VP +VP VK
Sbjct: 231 EGKVPNEDKVPDEVKVPDEDKVP--DEVKVPDEFKVPDEVK 269
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 108 ITTQLRVSETNSRDLYTRENVALNNAHNNQLIHRTQP*NREQPNFDNKHKNTK 266
+TTQ S N+RD+ ++EN +H +I + + + N +K K TK
Sbjct: 733 VTTQGNTSHRNTRDVMSQENTIDMTSHGTIMISKKRELTSQDANKTSK-KTTK 784
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 502 PYEVKVPIDKPYPVYKEVQVPLVKEVPYPV 413
P KVPI PYPV P +K +PYPV
Sbjct: 467 PQIEKVPIPFPYPV---PSPPQIKPMPYPV 493
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 580 PGPR*SAST-KPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKE 428
P P S T K + +E +REK + P+++P K+V +P V E
Sbjct: 686 PTPEPSLPTEKKKKEKREKKERKREKKTRRARTPVEEPENFEKDVPLPRVHE 737
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -3
Query: 604 QGQSR-EALPGPR*SASTKPLRSH-QENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVK 431
+G++R E P S+ L SH ++ R P ++K + + +P+ E++ PL +
Sbjct: 1243 RGRARAEKTPVSMSSSPVGELTSHTDQSQAQRPNPTPTDIKPNVHQEFPIPPELKPPLPQ 1302
Query: 430 EVPYP 416
P P
Sbjct: 1303 RFPTP 1307
>SB_35852| Best HMM Match : Collagen (HMM E-Value=0.18)
Length = 283
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = -3
Query: 271 IFLVFLCLLSKFGCSRFYGCVLCINWLL*ALFKATFSLVYRSREFVSETRSCVVIICYYF 92
+F V L L +F C FYG + + +L LF + + T ++ + +Y
Sbjct: 142 VFTVLLLLFLRFYCCCFYGSIAAVFTVLLLLFLRFYCCCFYGSIAAVFTVLLLLFLRFYC 201
Query: 91 VSFYMLVINTY*KYTLLY 38
FY + + LL+
Sbjct: 202 CCFYGSIAAVFTVLLLLF 219
>SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)
Length = 265
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 213 VFCVLIGCCEHYLRRR 166
VFCV+ G C+H LR R
Sbjct: 51 VFCVVAGVCQHVLRSR 66
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 505 VPYEVKVPIDKPYPVYKEVQVPLVKEVPY 419
VP V VP+ P P++++ +P+ + +P+
Sbjct: 1092 VPVPVPVPVRVPVPMHQQSPLPMPRPIPH 1120
>SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038)
Length = 607
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -3
Query: 589 EALPGPR*SASTKPLRSHQENPLHRREKVPYE--VKVPID--KPYPVYKEVQVPLVKEVP 422
E P P +T P P + VP E V VP++ P P ++ VP + P
Sbjct: 154 EQAPVPAVEQATVPAVEQAPVPAVEQATVPAEGQVLVPVEVRAPVPTEEQALVPAEVQAP 213
Query: 421 YPVKYHVPIY 392
P P+Y
Sbjct: 214 VPTVGRKPLY 223
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -3
Query: 589 EALPGPR*SASTKPLRSHQENPLHRREKVPYE--VKVPID--KPYPVYKEVQVPLVKEVP 422
E P P +T P P + VP E V VP++ P P ++ VP + P
Sbjct: 154 EQAPVPAVEQATVPAVEQAPVPAVEQATVPAEGQVLVPVEVRAPVPTEEQALVPAEVQAP 213
Query: 421 YPVKYHVPIY 392
P P+Y
Sbjct: 214 VPTVGRKPLY 223
>SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 213 VFCVLIGCCEHYLRRR 166
VFCV+ G C+H LR R
Sbjct: 11 VFCVVAGVCQHVLRSR 26
>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
Length = 169
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -3
Query: 559 STKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYP 416
STKP + P RR P K P D P E P V EVP P
Sbjct: 43 STKP--PIKPKPAVRRVPPPAPKKAPEDATSPKRNEAAPPPVNEVPPP 88
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 526 PLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVK 410
P+H E++P+ V +++ P++ VQVP P PV+
Sbjct: 275 PVHHTERIPFPVPFVVNR--PIHHTVQVP----YPVPVR 307
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 565 SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPL--VKEVPYPVK 410
S S+ R E+ L ++PYE P + YP P+ +K +P P K
Sbjct: 1680 SRSSAESRLPAESRLPAESRLPYESHSPYESRYPTEPSSAYPITVIKTLPAPPK 1733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,658
Number of Sequences: 59808
Number of extensions: 303461
Number of successful extensions: 956
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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