Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0214
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    31   0.46 
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    31   0.46 
At2g44060.2 68415.m05478 late embryogenesis abundant family prot...    28   4.3  
At2g44060.1 68415.m05477 late embryogenesis abundant family prot...    28   4.3  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   5.7  
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf...    27   7.5  
At5g01100.1 68418.m00014 expressed protein similar to axi 1 [Nic...    27   9.9  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    27   9.9  
At4g28050.1 68417.m04024 senescence-associated protein, putative...    27   9.9  
At3g19850.1 68416.m02514 phototropic-responsive NPH3 family prot...    27   9.9  
At1g33390.1 68414.m04133 helicase domain-containing protein simi...    27   9.9  

>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 580 PGPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHV 401
           P P   +   P++ +   P+++    P    V    P PVYK    P+ K  P PVK++ 
Sbjct: 55  PPPVYKSPPPPVKHYSPPPVYKSPPPP----VKYYSPPPVYKSPPPPVYKSPPPPVKHYS 110

Query: 400 P 398
           P
Sbjct: 111 P 111


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 580 PGPR*SASTKPLRSHQENPLHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHV 401
           P P   +   P++ +   P+++    P    V    P PVYK    P+ K  P PVK++ 
Sbjct: 55  PPPVYKSPPPPVKHYSPPPVYKSPPPP----VKYYSPPPVYKSPPPPVYKSPPPPVKHYS 110

Query: 400 P 398
           P
Sbjct: 111 P 111


>At2g44060.2 68415.m05478 late embryogenesis abundant family protein
           / LEA family protein similar to ethylene-responsive late
           embryogenesis-like protein [Lycopersicon esculentum]
           GI:1684830; contains Pfam profile PF03168: Late
           embryogenesis abundant protein
          Length = 325

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 505 VPYEVKVPIDKPYPVYKEVQVPLVK--EVPYPVKYHVPI 395
           +PY +KV +    PV   + +PL K  E+P P K  V I
Sbjct: 158 IPYRIKVDLIVDVPVLGRLTLPLEKCGEIPIPKKPDVDI 196


>At2g44060.1 68415.m05477 late embryogenesis abundant family protein
           / LEA family protein similar to ethylene-responsive late
           embryogenesis-like protein [Lycopersicon esculentum]
           GI:1684830; contains Pfam profile PF03168: Late
           embryogenesis abundant protein
          Length = 325

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 505 VPYEVKVPIDKPYPVYKEVQVPLVK--EVPYPVKYHVPI 395
           +PY +KV +    PV   + +PL K  E+P P K  V I
Sbjct: 158 IPYRIKVDLIVDVPVLGRLTLPLEKCGEIPIPKKPDVDI 196


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 602 RSK*RSPTRSPLKCQYQTLTKSSRKSLTPS 513
           RS  RSP RSP K   ++  +SSRKS++ S
Sbjct: 557 RSLSRSPIRSPRKSVSRSPVRSSRKSVSRS 586


>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 315

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 111 TTQLRVSETNSRDLYTRENVALNNAHNNQLIHRTQP*NREQPNFDN 248
           TT    S+    DL+   N+A+++ HNN   H+    N    + DN
Sbjct: 17  TTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVDNNNNDDDRDN 62


>At5g01100.1 68418.m00014 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 631

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 71  NKHVKANKVITDYNYTTSRLGNELPRSVYQRKR 169
           +K +K +KVI  +N+T SRL N  P    QR R
Sbjct: 317 SKLLKKHKVIV-FNHTDSRLANNSPPPSIQRLR 348


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 505 VPYEVKVPIDKPYPVYKEVQVPLVKEVPYPVKYHVP 398
           +P  VK P   P P+YK   V   K  P PV  + P
Sbjct: 368 IPPIVKKPCPPPVPIYKPPVVIPKKPCPPPVPVYKP 403


>At4g28050.1 68417.m04024 senescence-associated protein, putative
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 263

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 295 KSNKKKNVIFLVFLCLLSKFGCSRF 221
           K   K N++FL+FL ++   GC  F
Sbjct: 231 KKVAKVNIVFLIFLIIVYSVGCCAF 255


>At3g19850.1 68416.m02514 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 554

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 165 NVALNNAHNNQLIHRTQP*NREQPNFDNKHKNTKK 269
           N+A+    + QL + T+P +RE  N  NK  N++K
Sbjct: 453 NIAVQALKSQQLSNETRPHSREDKNKVNKIWNSRK 487


>At1g33390.1 68414.m04133 helicase domain-containing protein similar
           to kurz protein [Drosophila melanogaster] GI:5869803;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1237

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 523 LHRREKVPYEVKVPIDKPYPVYKEVQVPLVKEVPYP 416
           +     +P  +KVP+D    + K + +P V+  P+P
Sbjct: 751 IFEESSLPEIMKVPVDGVILLMKSMNIPKVENFPFP 786


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,020
Number of Sequences: 28952
Number of extensions: 207795
Number of successful extensions: 599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)