Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0211
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    29   0.82 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.82 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   5.8  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 470 SPQISKWVGFTALLTT*LQEPRERILQYIHKISKVMLLEICDLTTKSNNYTYVKSQI 300
           S  + K  GF   L+  + E    +++++ KIS+  LLE  D   +++ Y YV +++
Sbjct: 123 SKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQSCLLERLD--DEAHQYCYVDNEL 177


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 73  FIKTSITNGNETV-MRLRGGTAVVKSETLELIAQGGWRHLR 192
           F K S   G + V ++L GGTAVV   TLE I Q G  ++R
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVV-DVTLEAIKQSGIPNIR 126


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 370 LDILCIYCRMRSRGSWS*VVNRAVNPTHF 456
           LD+LC  C M  RG +   +N+  +  HF
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,159
Number of Sequences: 5004
Number of extensions: 41483
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)