Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0211
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 401 RILQYIHKISKVMLLEICDLTTKS---NNYTYVKSQISFKKAVYFLFFLLLSGWT 246
           R+L  I    K++  +   +  KS   N      +++   K  + +FFL L  WT
Sbjct: 242 RLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWT 296


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 401 RILQYIHKISKVMLLEICDLTTKS---NNYTYVKSQISFKKAVYFLFFLLLSGWT 246
           R+L  I    K++  +   +  KS   N      +++   K  + +FFL L  WT
Sbjct: 242 RLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWT 296


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 142 KSETLELIAQGGWRHLRCRCLWTP 213
           KS   ++    GWR LR    WTP
Sbjct: 207 KSNEKKIPKSSGWRKLRNIVHWTP 230


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 136 VVKSETLELIAQGGWRHLRCRCLWTP 213
           VV+ + ++     GWR LR    WTP
Sbjct: 439 VVELQPVKSSKSSGWRKLRNIVHWTP 464


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 590 SHDVVKRRPVNCNTTHYRANWVPGP 516
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 175 GWRHLRCRCLWTP 213
           GWR LR    WTP
Sbjct: 133 GWRKLRNIVHWTP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,006
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)