Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0211
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28770.1 68417.m04114 expressed protein                             28   6.6  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    28   6.6  
At1g27020.1 68414.m03294 expressed protein                             27   8.7  

>At4g28770.1 68417.m04114 expressed protein
          Length = 281

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 13  FFWGAFKRICVLVCIVPVSGFIKTSITNG 99
           +F   F  I +LVCIV + GFI     NG
Sbjct: 110 WFIYCFMAIGILVCIVTIIGFIAAEAING 138


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
           (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 458 SKWVGFTALLTT*LQEPRERILQYIHKISKVMLLEICDLTTKSNNYTYVKSQISFKKAV 282
           SKW     +  +    PR  I+Q   +  K +L  +CD  +++  Y   K  +SF  AV
Sbjct: 159 SKWKFLDGVKNSGAPPPRSVIVQQCIR-DKQVLEALCDYASRTKKYQPSKPVVSFSTAV 216


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 590 WENPGVTQLNRLAAHPPFASW 652
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,495
Number of Sequences: 28952
Number of extensions: 223871
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)