Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0208
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    29   2.5  
Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z68213-2|CAA92437.1|  388|Caenorhabditis elegans Hypothetical pr...    28   5.7  
X64963-1|CAA46126.1|  388|Caenorhabditis elegans protein ( C.ele...    28   5.7  
X64962-1|CAA46125.1|  388|Caenorhabditis elegans sex determinati...    28   5.7  
Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 316 SYSKPIICSILRPDFSR*ISTITL*CMYVCMRNSNKK 426
           SYSK II S     F   IST+   C+++ +RN+NKK
Sbjct: 170 SYSKLIILSF--DLFCTGISTVCYACVFMTIRNANKK 204


>Z70210-5|CAA94155.1|  312|Caenorhabditis elegans Hypothetical
           protein K08H2.5 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 400 VCMRNSNKKFTSQYLLRPVVDITKNTFTV*SLLVVPRS*NSTIINWN 540
           VC RN  KKF+   +L+ ++ + K+  T+ SL  + R      I+WN
Sbjct: 113 VCKRNDPKKFSPTNVLKIMLSVGKSLQTIHSLGYIHRD-----IHWN 154


>Z68213-2|CAA92437.1|  388|Caenorhabditis elegans Hypothetical
           protein C01F6.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 84  HYDEILHSIYYSITMQNRFWQS 149
           HY  +LH++Y++I    +FW +
Sbjct: 178 HYTSLLHTLYFNIPGMPQFWNN 199


>X64963-1|CAA46126.1|  388|Caenorhabditis elegans protein (
           C.elegans gene fem-3. ).
          Length = 388

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 84  HYDEILHSIYYSITMQNRFWQS 149
           HY  +LH++Y++I    +FW +
Sbjct: 178 HYTSLLHTLYFNIPGMPQFWNN 199


>X64962-1|CAA46125.1|  388|Caenorhabditis elegans sex determination
           protein protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 84  HYDEILHSIYYSITMQNRFWQS 149
           HY  +LH++Y++I    +FW +
Sbjct: 178 HYTSLLHTLYFNIPGMPQFWNN 199


>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 421 KKFTSQYLLRPVVDITKNTFTV*SLLVVPRS*NSTIINWNCKGWT 555
           KKF    L +      +  F + +LL V    N T +NWN   +T
Sbjct: 359 KKFAKANLFQMACSDVRERFHIFALLFVVMIRNMTAVNWNIDSFT 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,770
Number of Sequences: 27780
Number of extensions: 260153
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)