Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0207
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    33   0.041
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    31   0.16 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.5  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    26   4.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.1  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   8.1  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +2

Query: 92  TSAMPGAEPSRCLLFNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGK----KDLWKRMW 259
           TS++P    S   + NTL  P L  + S    +TV  + FH+  + G      + W+  +
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISGASSPVSNFWESEF 799

Query: 260 MTAVAPGSMDELYS 301
            +AV P S+ +  S
Sbjct: 800 ASAVFPRSISKTTS 813


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 336 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLQTI 440
           RY LEQ L+  P+EH +  TE  + PP+  R++T+
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 436  RSVRMGLSTIRTALLCMESNGRSWFWEPRPKDGSSTSREAGLVLYK 573
            R + MGL   + A++    +  S+F   +  +G+S  RE  LV YK
Sbjct: 1006 RIIEMGLIESKIAVVIGTPHAVSFFKIGKLSEGASVKRERTLVFYK 1051


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 469  TALLCMESNGRSWFWEPRPKDGSSTSREAG 558
            T  +CME +G  + W+ RP++G      +G
Sbjct: 1396 TCPICMEQSGGIYPWQLRPRNGMHPDHISG 1425


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 694 NFEAIAQFGSHLKAKAKWASKML 626
           +F+AI   GS +KAKAKWA + +
Sbjct: 190 HFDAILTMGS-IKAKAKWALRWI 211


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 305 HRSRV-HPYYLGPLRSSTCVSRGLFCHVPSGYGMSSPPRCFPSAMTCPSSNEA 150
           H +R+ HP +  P  S T     L C  P+ Y  S+PP+  P+    PSS  +
Sbjct: 195 HPNRLPHPIHNHPYSSPTSYPPPL-C--PATYCPSNPPQLAPATAIAPSSQSS 244


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 153 GLWRVLNRRQRLGSAPGIAEVHGRRVPHSPSGG 55
           G W  +N    L + PGI  +  + +P++PSGG
Sbjct: 772 GQWGFINTP--LSNLPGIEALGQQMMPNAPSGG 802


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -2

Query: 613 RAKRVLHAWTKVLLYKAQVRPRVKYCSHLWAGAPKTSFFHLTPYR 479
           R  R L    K  L K  VR    Y +HL     K    H TPYR
Sbjct: 6   RFARALDVGYKNFLSKDAVRNIFAYDNHLRGLVQKECKIHQTPYR 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,430
Number of Sequences: 5004
Number of extensions: 85532
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)