Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0207
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 32 0.39
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 30 1.6
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 30 2.1
09_02_0440 - 9423874-9423999,9424199-9424393,9424885-9425091,942... 29 3.7
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 3.7
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 29 3.7
03_05_0421 + 24065725-24066052,24066811-24067040 29 3.7
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 4.8
10_08_0555 + 18738330-18738599 29 4.8
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 4.8
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 29 4.8
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 29 4.8
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 28 6.4
01_06_1224 - 35508842-35510404 28 6.4
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 28 8.5
06_01_0647 - 4683689-4683988,4684349-4684489 28 8.5
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 28 8.5
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391... 28 8.5
04_03_0202 + 12637271-12637499,12638217-12638821 28 8.5
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 8.5
02_05_0363 - 28297295-28298167 28 8.5
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 320 GKNEMPVSSRTIPQSTPHGTYG-TKYRGNRSPSADPEAPNDP*EWD 454
G+ E V +T Q+ PH YG T R R+ + P A N+ WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 497 EEAGFGSPGPKMGAVLHARPDLCFIKQNLCPGVKYPLRSVEDSQHFGR 640
EE P P G ++H PDL Q+L V YP + DS F R
Sbjct: 132 EEHDMFVPSPLGGEMVHVDPDLL---QDLLRDVDYPAMNERDSMKFSR 176
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 454 IPFSRIVWSLWVCGGTSVPSVFCTVCSMGSALRNC 350
+PF + LW+CGG + +C+ S + +R+C
Sbjct: 1 MPFHMLASLLWLCGGI---AAYCSAASAATCVRSC 32
>09_02_0440 -
9423874-9423999,9424199-9424393,9424885-9425091,
9425518-9425707,9425849-9425931
Length = 266
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +2
Query: 236 KDLWKRMWMTAVAPGSMDELYSGGGRCDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPS 415
KD+ +R+ MT D L + G CD E +SS I T G YGT+ S +
Sbjct: 183 KDIVERL-MTDTTKADKDRLPNTG--CDPNWEHGLSSIFIEVQTDQGLYGTRSTAVLSVN 239
Query: 416 ADPEA 430
D EA
Sbjct: 240 YDGEA 244
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 337 GIISNNSSEHSPWNIRYKIQREPKSLRR 420
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 415 RRPRGSKRSVRMGL-STIRTALLCMESNGRSWFWEPRPKDGSSTSREAGLVLYK---AKP 582
RRP + + + STI+ L NG +W W P ++GS TS L K KP
Sbjct: 749 RRPAADNKKLYADVDSTIQHLQLQATMNG-NWMW-PYKQEGS-TSHYISLQDDKRMQTKP 805
Query: 583 LSRREVPASLC 615
LS +P S+C
Sbjct: 806 LSSPSLPGSIC 816
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 350 FEMIPASRFYHRTARHRSRVHPYY-LGPLRSSTC-VSRGLFCHVPSGYGMSSPP 195
F A+R Y TA RSR+HP Y G L +S C VS G H G+ PP
Sbjct: 51 FARTEATRLY-MTANARSRLHPSYPCGYLGNSICRVSAG---HSTPKRGVGCPP 100
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.7 bits (61), Expect = 4.8
Identities = 28/104 (26%), Positives = 46/104 (44%)
Frame = +2
Query: 323 KNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEE 502
K+E+ ++ R I + TP + G PSA +PND E D+ S SS+ S+
Sbjct: 1280 KDEV-IAGRKIDKVTPINSIGD----TPVPSAIL-SPNDSLEQDHNLSRNVSSLSSEEST 1333
Query: 503 AGFGSPGPKMGAVLHARPDLCFIKQNLCPGVKYPLRSVEDSQHF 634
+GF + A+ P+ C + L KY + + Q +
Sbjct: 1334 SGFYD--SFLSALKDLHPEFCLNNEKLTLKSKYTVLCIYAKQFY 1375
>10_08_0555 + 18738330-18738599
Length = 89
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 470 RPSSVWSQMEEAGFGSPGPKMGAVLHARPD 559
R ++ W+ E G GSPG +GAV R D
Sbjct: 51 RWTAAWADGSEKGKGSPGHVVGAVASGRED 80
>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.7 bits (61), Expect = 4.8
Identities = 28/104 (26%), Positives = 46/104 (44%)
Frame = +2
Query: 323 KNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEE 502
K+E+ ++ R I + TP + G PSA +PND E D+ S SS+ S+
Sbjct: 1177 KDEV-IAGRKIDKVTPINSIGD----TPVPSAIL-SPNDSLEQDHNLSRNVSSLSSEEST 1230
Query: 503 AGFGSPGPKMGAVLHARPDLCFIKQNLCPGVKYPLRSVEDSQHF 634
+GF + A+ P+ C + L KY + + Q +
Sbjct: 1231 SGFYD--SFLSALKDLHPEFCLNNEKLTLKSKYTVLCIYAKQFY 1272
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 413 RDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLGPLRSSTCVSRGLF 234
R SL +++ E +LF + A+ +HR H + +GP+ +
Sbjct: 504 RKKSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFCGHPVV 563
Query: 233 CHVPSGYG 210
PSGYG
Sbjct: 564 FIAPSGYG 571
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 413 RDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLGPLRSSTCVSRGLF 234
R SL +++ E +LF + A+ +HR H + +GP+ +
Sbjct: 393 RKKSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFCGHPVV 452
Query: 233 CHVPSGYG 210
PSGYG
Sbjct: 453 FIAPSGYG 460
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +1
Query: 379 IRYKIQREPKSLRRPRGSKRSVRMGLSTIRTALLCMESNGRSWFWEPRPKDGSSTSREAG 558
+R+ +R + RP RS+ L + +NG W W R + S+E G
Sbjct: 73 VRHSDRRPARGTPRPPPQNRSIEAELQAPHGVVTAPLANG--WQWGARSCPPGTESKEGG 130
Query: 559 LVLYKAKP 582
L L P
Sbjct: 131 LPLSGCDP 138
>01_06_1224 - 35508842-35510404
Length = 520
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 517 PRPKDGSSTSREAGLVLYKAKPLSRREVPASL 612
P P DG STS ++GL+ A SR P+SL
Sbjct: 363 PNPPDGGSTSPDSGLIRNNASDPSRNG-PSSL 393
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 524 GRGSQNQLLPFDSIQRRAVRIVDNPILTDRLEPL-GLRRDFGS-LCILYRMFHGEC 363
G G L+P DS RA+ I P+ L+P+ G+ R + LC + H +C
Sbjct: 101 GGGGDGWLIPCDSRHGRALFITQPPLQLLVLDPITGMERPLAAVLCAVDGCGHHDC 156
>06_01_0647 - 4683689-4683988,4684349-4684489
Length = 146
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +1
Query: 415 RRPRGSKRSVRMGLSTIRTALLCMESNGRSWFWEPRPKDGSSTSREAGLVLYKAKPLSRR 594
RR RG R R + A L M G+S W + A + +P+ RR
Sbjct: 38 RRERGGSRDERRWVLYAADASLLM---GKSQIWRDETRQAGHRDEAASRRRGRQQPVIRR 94
Query: 595 EVPASL 612
E+P L
Sbjct: 95 EMPGLL 100
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = -1
Query: 221 SGYGMSSPPRCFPSAMTCPSS--NEACGEY---*TEGSGLALPLALLK 93
SGY S+ P PS++TC + E CG++ E GL + L L+K
Sbjct: 970 SGYNGSTSPTWLPSSLTCLQTLHLEKCGKWQILPLERLGLLVKLVLIK 1017
>04_04_1054 +
30437468-30437763,30438647-30438779,30439099-30439159,
30439370-30439483,30439813-30439971,30440124-30440206,
30440423-30440549,30440872-30440951,30441027-30441113,
30441316-30441440,30441543-30441603,30441806-30441859,
30441946-30442023,30442449-30442554,30442655-30442803,
30442945-30443052
Length = 606
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 554 PDLCFIKQNLCPGVKYPL 607
PDLCF QN+ P ++ PL
Sbjct: 458 PDLCFFPQNVVPTLRTPL 475
>04_03_0202 + 12637271-12637499,12638217-12638821
Length = 277
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 201 GAHSIAGWYVAKKTSGNACG*PQWPQVVWMNSTPVAGGAMV 323
G+++ AG A +SG++ ++ QVVW N+T V G +V
Sbjct: 214 GSNTCAG-AAAAASSGSSSPCTRYTQVVWRNTTQVGCGRIV 253
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 415 RRPRGSKRSVRMGL-STIRTALLCMESNGRSWFWEPRPKDGSSTSREAGLVLYK---AKP 582
RRP + + + STI+ L NG +W W P +GS TS L K KP
Sbjct: 775 RRPTADHKKLYADVDSTIQHLQLQATMNG-NWMW-PCKSEGS-TSHYISLQDDKRMQTKP 831
Query: 583 LSRREVPASLC 615
LS +P S+C
Sbjct: 832 LSSPSLPGSIC 842
>02_05_0363 - 28297295-28298167
Length = 290
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -1
Query: 302 RSRVHPYYLGPLRSSTCVSRGLFCHVPSGYGMSS--PPRCFPSAMTCPSSNEACGEY 138
R + HPY G +TC++ L + G SS PP P A P+ + Y
Sbjct: 4 RCKKHPYQAGGGVCATCLNDRLLALAAAQNGASSSPPPPAAPPAAAAPAFPRSVSPY 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,722,527
Number of Sequences: 37544
Number of extensions: 681802
Number of successful extensions: 2077
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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