Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0207
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein sp...    29   3.3  
AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical...    29   4.4  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75713-7|CAD56596.1|  475|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75713-6|CAB00052.1|  472|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    28   5.8  
L25423-1|AAA28109.1|  472|Caenorhabditis elegans mei-1 protein.        28   5.8  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 360 RALPMEHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 494
           R+   +H    T   + P  ++  Q + +N I  +DN NGPPL  VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 360 RALPMEHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 494
           R+   +H    T   + P  ++  Q + +N I  +DN NGPPL  VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 634 WTPTWLWLSNDF--QTGQLLRNL 696
           WTP W W  N+F  QTG +  NL
Sbjct: 44  WTPNWEWTVNEFWDQTGNVADNL 66


>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 92  TSAMPGAEPSRCLLFNT--LHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKDLWK 250
           +S+ P + PSR L   +  L KPR        +GN+++    H  ++  + D WK
Sbjct: 38  SSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>Z19152-6|CAA79542.2|  774|Caenorhabditis elegans Hypothetical
          protein B0464.5c protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 60 GGPYASSALQGPNKKKKKKT 1
          GGP  +S +  PNKK+KKKT
Sbjct: 2  GGPEKNSTVPLPNKKRKKKT 21


>Z19152-5|CAA79541.1|  698|Caenorhabditis elegans Hypothetical
          protein B0464.5b protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 60 GGPYASSALQGPNKKKKKKT 1
          GGP  +S +  PNKK+KKKT
Sbjct: 2  GGPEKNSTVPLPNKKRKKKT 21


>U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical
           protein C34E10.11 protein.
          Length = 255

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 41  DEAYGPPDGEWGTRRPWTSAMPGAEPSRCLLFNTLHKPRLKKD 169
           DE +G    + G R+P     P   PS+ +L++ +H P  K +
Sbjct: 26  DEVFGVQKRQMGRRQPKQGKPPILPPSKKVLYHVVHAPWQKPE 68


>AF241656-1|AAG36873.1|  698|Caenorhabditis elegans SR protein
          specfic kinase SPK-1 protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 60 GGPYASSALQGPNKKKKKKT 1
          GGP  +S +  PNKK+KKKT
Sbjct: 2  GGPEKNSTVPLPNKKRKKKT 21


>AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical
           protein Y25C1A.4 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 228 VAKKTSGNACG*PQWPQVVWMNSTPVAGGAMVKTRCRYH 344
           +A+KTSG ACG P   Q  W      +GG  +K    +H
Sbjct: 346 MARKTSGYACGKPNKCQPGWKFFDRQSGGWCMKVFTGFH 384


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 530 SLGRGSQNQLLPFDSIQRRAVRIVDNPILTDRLEP 426
           S+GRG++ + +P D +  R   IVD  +LT    P
Sbjct: 273 SIGRGAEEECVPCDLLLLRGPCIVDESMLTGESVP 307


>Z75713-7|CAD56596.1|  475|Caenorhabditis elegans Hypothetical
           protein T01G9.5b protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 413 SADPEAPNDP*EWDYRQSERPSSVWSQMEEAGFGSPGPK 529
           S  PE P DP  W       PSS      + G G+ GP+
Sbjct: 90  SGSPEPPADPDVWSKPSPPLPSSSKFGATKKGVGAAGPR 128


>Z75713-6|CAB00052.1|  472|Caenorhabditis elegans Hypothetical
           protein T01G9.5a protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 413 SADPEAPNDP*EWDYRQSERPSSVWSQMEEAGFGSPGPK 529
           S  PE P DP  W       PSS      + G G+ GP+
Sbjct: 90  SGSPEPPADPDVWSKPSPPLPSSSKFGATKKGVGAAGPR 128


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
 Frame = +2

Query: 326 NEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEEA 505
           +E+PV  RT            + +   SPS+     +D    +++  ++ SS  S   ++
Sbjct: 541 SEIPVIIRTTQVGGSDKPKDPRKQPIGSPSSAKRKHDDVARREFKIPKKHSS--SSKPDS 598

Query: 506 GFGSPG-PKMGAVLHARP-DLCFIK----QNLCPGVKYPLRSVEDSQHFGRPLGFGFQMT 667
            +GS   PK  + + ++P    + K    Q LC G        +DS HF  P+G   +++
Sbjct: 599 RYGSSSHPKESSAMQSKPYKSSYTKSQADQELCDG-----DDRKDSTHFLNPVGHLARLS 653

Query: 668 SKLGNC 685
           S L NC
Sbjct: 654 SLLVNC 659


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
 Frame = +2

Query: 326 NEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEEA 505
           +E+PV  RT            + +   SPS+     +D    +++  ++ SS  S   ++
Sbjct: 583 SEIPVIIRTTQVGGSDKPKDPRKQPIGSPSSAKRKHDDVARREFKIPKKHSS--SSKPDS 640

Query: 506 GFGSPG-PKMGAVLHARP-DLCFIK----QNLCPGVKYPLRSVEDSQHFGRPLGFGFQMT 667
            +GS   PK  + + ++P    + K    Q LC G        +DS HF  P+G   +++
Sbjct: 641 RYGSSSHPKESSAMQSKPYKSSYTKSQADQELCDG-----DDRKDSTHFLNPVGHLARLS 695

Query: 668 SKLGNC 685
           S L NC
Sbjct: 696 SLLVNC 701


>L25423-1|AAA28109.1|  472|Caenorhabditis elegans mei-1 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 413 SADPEAPNDP*EWDYRQSERPSSVWSQMEEAGFGSPGPK 529
           S  PE P DP  W       PSS      + G G+ GP+
Sbjct: 90  SGSPEPPADPDVWSKPSPPLPSSSKFGATKKGVGAAGPR 128


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 29  PCRADEAYGPPDGEWGTRRPWTSAMPGAEPSRCLLFNTLHKP 154
           P R  +   PP    G R P  S +PG E    + FN  H P
Sbjct: 113 PPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,191,260
Number of Sequences: 27780
Number of extensions: 511827
Number of successful extensions: 1483
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)