Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0207
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.41 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 381 TVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKK 503
           TV    G E+ P TQ +   R      N  G P+  V W K
Sbjct: 303 TVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLK 343


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 494 FDSIQRRAVRIVDNPILTDRLEPLGL 417
           +DSI+ R   I D   +T+   PLGL
Sbjct: 167 YDSIEARDSAIFDGDFITENNLPLGL 192


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 701 GVKFRSNCPVWKSFESQSQVGVQNAGSPQQSEAGTSRLDKGFAL*STSPASREVL 537
           G++     P+WKS  S      QN+  P +S AG +   +   +  T+P   + L
Sbjct: 213 GLQPGEGLPMWKSDTSDGPESHQNSNVP-KSVAGLNVSSRRSDMNGTTPLDEKPL 266



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 323 KNEMPVSSRTIPQSTPHGTYGTKYRGN-RSPSADPEAPNDP 442
           +++ P S    PQ +PH +     RG+  +PS  P     P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 364 HSPWNIRYKIQREPKSL 414
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 489 VKWKKLVLGAPAQRWEQYF 545
           V+W   +LG PA+R ++Y+
Sbjct: 199 VEWD--ILGVPAERHKKYY 215


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 378 HTVQNTEGTEVPPQTQRLQTIRENGIIDNPN---GPPLYGVKWKKLVLGAPAQR 530
           H   NT+G  +   TQR Q  +++ ++  P+    P    +K ++  L  PA R
Sbjct: 164 HPELNTQGIALADLTQRAQIGQKHKLLIGPSIRITPAKKRIKLEQSPLCPPAPR 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,562
Number of Sequences: 438
Number of extensions: 6593
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)