Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0207
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08010.1 68416.m00978 expressed protein 33 0.19
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ... 30 1.3
At3g22520.1 68416.m02846 expressed protein 30 1.8
At3g16200.1 68416.m02045 expressed protein 30 1.8
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr... 29 2.3
At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine... 28 5.3
At3g52760.1 68416.m05813 integral membrane Yip1 family protein c... 28 5.3
At2g44260.2 68415.m05508 expressed protein 28 5.3
At2g44260.1 68415.m05507 expressed protein 28 5.3
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 28 7.1
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 28 7.1
At4g03940.1 68417.m00557 expressed protein 28 7.1
At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr... 28 7.1
At5g66100.1 68418.m08327 La domain-containing protein similar to... 27 9.3
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 27 9.3
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 9.3
>At3g08010.1 68416.m00978 expressed protein
Length = 374
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 87 HGLQQCQGQSQAAAFCLILSTSLV*RRTCHSARETPWRGAHSIAGWYVAKKTSG 248
+GL+ C ++ ++ CLILS + R + ++TP + A W AKKTSG
Sbjct: 292 NGLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEA-WESAKKTSG 344
>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
protein (TRH1) identical to tiny root hair 1 protein
[Arabidopsis thaliana] gi|11181958|emb|CAC16137;
KUP/HAK/KT Transporter family member, PMID:11500563;
identical to cDNA mRNA for tiny root hair 1 protein
(trh1) GI:11181957
Length = 775
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 469 FGLSIIPFSRIVWS-LWVCGGTSVPSVFCTVCSMGSALRNCSR*YRHLVFTIAPPATGVE 293
+ L P +IV WV G +P + V + A+ C R RH+ F +
Sbjct: 358 YALGCFPRVKIVHKPRWVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLA 417
Query: 292 FIHTTW 275
F+ TTW
Sbjct: 418 FV-TTW 422
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 335 PVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP*EWDYRQSERPSSV 484
PV ++ P+STP G+ K +G +P+ P++ P RQS R +S+
Sbjct: 251 PVEAK--PKSTPRGSSNKKKKGATTPATGPQSSTKP--KPSRQSGRRTSI 296
>At3g16200.1 68416.m02045 expressed protein
Length = 452
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 304 WRAVRW*KRDAGIISNNSSEHSPWNIRYKIQREPKSLRRPRGSKRSVRMG 453
W RW K D I S HS W +R + P PR ++ +R G
Sbjct: 173 WFMARWLKPDMMIESGAFKGHSTWVLRQAMPDTPMISLTPRHPEKYLRKG 222
>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 928
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = -1
Query: 299 SRVHPYYLGPLRSSTCVSRGLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*TEGSG 120
+R P +G + S VS G + GY F +A+ PSS + + EG
Sbjct: 507 NRTDPEKVGKILVSDAVSNGGSGN--GGYANGHGANNF-NALNSPSSGDNSDRFLLEGGS 563
Query: 119 LALPLALLKSMGDGYPTHHQVGR 51
+ +P+ +L+ + + + + +GR
Sbjct: 564 VTIPMEVLRQVTNNFSEDNILGR 586
>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine
deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 298
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 538 CSHLWAGAPKTSFFHLTPYRGGPFGLSIIPFSRIVWSLW 422
C+HL A K + PY P G++++ F V+S W
Sbjct: 189 CNHLSCRALKAANRSYAPYSKSPSGVALMDFQGRVYSGW 227
>At3g52760.1 68416.m05813 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 257
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 117 GSAPGIAEVHGRRVPHSPSGGPYASSA 37
GS+P A V RRVP +P P SSA
Sbjct: 16 GSSPATANVQQRRVPTAPYQPPRQSSA 42
>At2g44260.2 68415.m05508 expressed protein
Length = 583
Score = 28.3 bits (60), Expect = 5.3
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 469 TALLCMESNGRSWFWEPRPKDGSSTSREAGLVL--YKAK-PLSR-REVPASLC*GLPAFW 636
T L ++ +G +FW+P P DG + GL++ Y K PL + R + + L A
Sbjct: 162 TESLKIKQDGTGYFWQPVPPDG---YQAVGLIVTNYSQKPPLDKLRCIRSDLTEQCEA-- 216
Query: 637 TPTWLWLSNDFQTGQLLRNLTPS 705
TW+W +N G + NL P+
Sbjct: 217 -DTWIWGTN----GVNISNLKPT 234
>At2g44260.1 68415.m05507 expressed protein
Length = 553
Score = 28.3 bits (60), Expect = 5.3
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = +1
Query: 469 TALLCMESNGRSWFWEPRPKDGSSTSREAGLVL--YKAK-PLSR-REVPASLC*GLPAFW 636
T L ++ +G +FW+P P DG + GL++ Y K PL + R + + L A
Sbjct: 132 TESLKIKQDGTGYFWQPVPPDG---YQAVGLIVTNYSQKPPLDKLRCIRSDLTEQCEA-- 186
Query: 637 TPTWLWLSNDFQTGQLLRNLTPS 705
TW+W +N G + NL P+
Sbjct: 187 -DTWIWGTN----GVNISNLKPT 204
>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 138 LNRRQRLGSAPGIAEVHGRRVPHSPSGGPYASSALQ 31
++ R R S G + +G +PHS S PY + Q
Sbjct: 964 ISSRSRSYSDDGFHQSYGEYMPHSASSSPYGNGQTQ 999
>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 138 LNRRQRLGSAPGIAEVHGRRVPHSPSGGPYASSALQ 31
++ R R S G + +G +PHS S PY + Q
Sbjct: 964 ISSRSRSYSDDGFHQSYGEYMPHSASSSPYGNGQTQ 999
>At4g03940.1 68417.m00557 expressed protein
Length = 310
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 171 MSFFKRGLWRVLNR-RQRLGSAPGIAEVHGRRVPHSPSGGPYASSALQGPNKKKKKK 4
M+F+K G + + + L G + VPH+ +GG A+ G KKK +K
Sbjct: 1 MNFYKDGKKVISGKYHEGLYYLEGTVVKAEKSVPHAENGGKSVVKAVVGVRKKKSRK 57
>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
protein / glycosyltransferase sugar-binding DXD
motif-containing protein low similarity to
alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
[gi:5726306], Gb3 synthase, Rattus norvegicus
[gi:9082162] ; contains Pfam profiles PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif
Length = 736
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 652 KAKWASKMLGVLNRAKRVLHAWTKV 578
+AKW K + +N+ ++H W KV
Sbjct: 681 EAKWVEKTVQDMNKGSYMIHLWNKV 705
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 407 SPSADPEAPNDP*EWDYRQSERPSSVWSQMEEAGFGSPGPKMGA 538
+PS P N+ ++D ++P VW+ GP MGA
Sbjct: 55 APSVSPPTGNNSSDYD-NADKKPPPVWNMPSSNSSSDVGPVMGA 97
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 392 ILYRMFHGECSEELFEMIPASRFYH 318
I +MFH EC E FE+I S +H
Sbjct: 108 ICEKMFHKECVESPFEIIHPSHPFH 132
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 270 WPQVVWMNSTPVAGGAMVKTRCRYHLEQFLRALPMEHTVQNTEG 401
WP V+ + P A + K H E+FL +LP++H G
Sbjct: 597 WPLVLKLKDWPPA--KVFKDNLPRHAEEFLCSLPLKHYTHPVNG 638
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,501
Number of Sequences: 28952
Number of extensions: 485116
Number of successful extensions: 1416
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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