Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0206
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    28   7.0  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    28   7.0  

>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 288 DKTMAFYSSCIFIIMSKRYSIHRFYLNTKIKFYYDDDCADVHI-KH*I*DIE 440
           DK+M  Y+  + ++  +R+ + R  L+    ++    C D +  +H I D+E
Sbjct: 9   DKSMEKYTDVVLVVKQERFYVSRAILSEHCTYFQSLFCGDSNYQEHIISDVE 60


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 467 SLSSHLVIELNILYSVFDMYIRAVIVIIKFNFSV*IKSMYTISF*HY-YENT*RIKCHSF 291
           S++S     LN+  SVF  +  A+++I+K    + + +    S   +  E+  R+ C S 
Sbjct: 772 SINSFNPSTLNLFISVFSPFTMAILLILKLLIPILLVTSAFASIVRFDQESIQRLCCFSL 831

Query: 290 IFLKF 276
           IF  F
Sbjct: 832 IFTDF 836


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,217
Number of Sequences: 27780
Number of extensions: 235390
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)