Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0206
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37350.2 68418.m04487 RIO1 family protein similar to extragen...    28   4.9  
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen...    28   4.9  
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen...    28   4.9  
At5g55960.1 68418.m06979 expressed protein                             28   6.5  
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    27   8.6  

>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
           suppressor of the bimD6 mutation (SUDD) [Emericella
           nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
           GI:1359602; contains Pfam profile PF01163: RIO1 family
          Length = 385

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 608 IVIRLTIGRIGYRAPP-RAVSLR*QQLASPLCCLHLLYINKKILVKSCSLSSHLVIELNI 432
           +++   IGR G+ AP  +  +L   +L    C L L+ I  ++L + C L    + E NI
Sbjct: 112 VLVMEFIGRDGWAAPRLKDAALSLDKLRE--CYLELI-IQMRVLYQKCKLVHGDLSEYNI 168

Query: 431 LYSVFDMYI 405
           LY    +YI
Sbjct: 169 LYFEGHLYI 177


>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
           suppressor of the bimD6 mutation (SUDD) [Emericella
           nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
           GI:1359602; contains Pfam profile PF01163: RIO1 family
          Length = 531

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 608 IVIRLTIGRIGYRAPP-RAVSLR*QQLASPLCCLHLLYINKKILVKSCSLSSHLVIELNI 432
           +++   IGR G+ AP  +  +L   +L    C L L+ I  ++L + C L    + E NI
Sbjct: 258 VLVMEFIGRDGWAAPRLKDAALSLDKLRE--CYLELI-IQMRVLYQKCKLVHGDLSEYNI 314

Query: 431 LYSVFDMYI 405
           LY    +YI
Sbjct: 315 LYFEGHLYI 323


>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
           suppressor of the bimD6 mutation (SUDD) [Emericella
           nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
           GI:1359602; contains Pfam profile PF01163: RIO1 family
          Length = 537

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 608 IVIRLTIGRIGYRAPP-RAVSLR*QQLASPLCCLHLLYINKKILVKSCSLSSHLVIELNI 432
           +++   IGR G+ AP  +  +L   +L    C L L+ I  ++L + C L    + E NI
Sbjct: 259 VLVMEFIGRDGWAAPRLKDAALSLDKLRE--CYLELI-IQMRVLYQKCKLVHGDLSEYNI 315

Query: 431 LYSVFDMYI 405
           LY    +YI
Sbjct: 316 LYFEGHLYI 324


>At5g55960.1 68418.m06979 expressed protein
          Length = 648

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 297 MAFYSSCIFIIMSKRYSIHRFYLNTKIKF 383
           +AF+  C+  ++ + Y+IH  Y++T + F
Sbjct: 513 IAFFQGCLTWLLFRLYNIHFLYMSTVLAF 541


>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 533 LASPLCCLHL-LYINKKILVKSCSLSSHLVIELNILYSVFDMYIRAV 396
           LAS +    L + + +K++ +S SL   L I+LN +   F  YI+ V
Sbjct: 330 LASAVAMASLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEV 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,859
Number of Sequences: 28952
Number of extensions: 210824
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)