Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0204
         (714 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    52   2e-08
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    52   2e-08
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    52   2e-08
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    52   2e-08
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   5e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    29   0.012

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +2

Query: 395 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGPALG 520
           HYT G E+VD VLD +RK  + C  LQGF + HS GGG   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSG 42



 Score = 39.9 bits (89), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 508 SGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 633
           +GSG  +LL+ ++  +Y  +    +++ P+P+VS  VVEPYN
Sbjct: 39  TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 80


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +2

Query: 395 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGPALG 520
           HYT G E+VD VLD +RK  + C  LQGF + HS GGG   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSG 42



 Score = 39.9 bits (89), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 508 SGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 633
           +GSG  +LL+ ++  +Y  +    +++ P+P+VS  VVEPYN
Sbjct: 39  TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 80


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +2

Query: 395 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGPALG 520
           HYT G E+VD VLD +RK  + C  LQGF + HS GGG   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSG 42



 Score = 39.9 bits (89), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 508 SGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 633
           +GSG  +LL+ ++  +Y  +    +++ P+P+VS  VVEPYN
Sbjct: 39  TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 80


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +2

Query: 395 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGPALG 520
           HYT G E+VD VLD +RK  + C  LQGF + HS GGG   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSG 42



 Score = 39.9 bits (89), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 508 SGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 633
           +GSG  +LL+ ++  +Y  +    +++ P+P+VS  VVEPYN
Sbjct: 39  TGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYN 80


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 5e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 78  MRECISVHVGQAGVQIGNACWE 143
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 35.9 bits (79), Expect = 0.001
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 133 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAARTPC 270
           P    T WS AS+   RCP+TR S  E +++  + + P LA  + C
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRS--EAVMTRSTPSSPRLAQASTC 62


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 29.5 bits (63), Expect(2) = 0.012
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 184 CPQTRPSGVETILSTLSSARPELAARTPCCLR 279
           C   RPS ++   ++ S  RP+LAA +  C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195



 Score = 21.8 bits (44), Expect(2) = 0.012
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 127 VMPAGSFTAWSTASSLMARCPQTRPSGV 210
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,717
Number of Sequences: 2352
Number of extensions: 16727
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)