Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0202
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    28   1.2  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   6.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.4  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 704 CQYITGRVSKSLFFLFLFITNLKCS 630
           C +I+G  +KSL+  ++F T  KCS
Sbjct: 263 CAFISGSSTKSLYNDYMFHTEFKCS 287


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 713 YSYCQYITGRVSKSLFFLFLFITNLKCSNRT 621
           Y+Y  Y+ G+   SL+ L  ++ N  CS  T
Sbjct: 16  YAYKLYVEGKDEHSLYILDNYLKNANCSENT 46


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 393 LMLVTHNRRDIYSFC-IFKDIPMNLPSIEFISNKYLHMYIIL 271
           +++ +HN   + +   +FK+I  N P   FIS + LH Y+ +
Sbjct: 208 IVITSHNTNPMATVMRLFKEIN-NAPFPNFISKEILHYYLFI 248


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6    ICTTLYYNDNHKHLTICCLLPLFCYQQLHILP-L*ICFYTKFINFMNSIL 152
            + T  YYN N K      ++P  CYQ   +L  L  C  + FI F  S +
Sbjct: 1384 VVTVCYYNGNQKLSYDTSIVPRGCYQLGPVLSWLKRCVISIFIVFWISFI 1433


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 37  ISTLQYVVCYHYSVINSYIYYRYK 108
           IST+      HY   N+ +YYRY+
Sbjct: 273 ISTVDMYAQVHYIRFNTLLYYRYQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,413
Number of Sequences: 5004
Number of extensions: 49044
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)