Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0202
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          32   0.55 
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.1  
SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)         28   9.0  

>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 16  LCIITIIIST-LQYVVCYHYSVINSYIYYRYKY 111
           + I TIII+T + + +C+HY     Y YY Y Y
Sbjct: 505 IIITTIIITTTIIFTICHHYYYYYYYYYYYYYY 537


>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 53  MLSVTIILLSTVTYITVINMLLYKIYQFHEQH 148
           ++ V II ++ +  I +IN+ LY+++++H  H
Sbjct: 98  IIIVNIITITIIITIIMINIYLYQLHRYHHPH 129


>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 416

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 56  LSVTIILLSTVTYITVINMLLYKIYQFHEQHFAKYCYGDVSPYVHTH 196
           +S  I+ L     I  I+ LLY + +FH+     YCY    P   TH
Sbjct: 144 ISKIIVALVWFASIACISPLLYAL-KFHDAGNESYCYEKWEPLFDTH 189


>SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 62  VTIILLSTV-TYITVINMLLYKIYQFHEQH 148
           +TII   T+ TY+T+I  +L+  +Q H+ H
Sbjct: 85  MTIITYMTIITYMTIITYILHDHHQLHDHH 114


>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
          Length = 398

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 53  MLSVTIILLSTVTYITVINMLLYKIYQFH 139
           ++++T+I + T+T IT+I + +   Y +H
Sbjct: 61  IITITVITIITITVITIITITIIINYDYH 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,194,717
Number of Sequences: 59808
Number of extensions: 324395
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)