Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0202
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    30   1.4  
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    28   5.6  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    28   7.3  

>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 51  ICCLLPLFCYQQLHILPL--*ICFYTKFINFMNSILQNIAMVTSVRTYIHTFKTT 209
           + CLL LFC    H+L +   I FY K + FM    Q IA + +   Y    + T
Sbjct: 610 VSCLLHLFCATYAHLLVVLDDIQFYEKQVPFMLEKQQRIASMLNTLVYYGLLRGT 664


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 13  QLCIITII-ISTLQYVVCYHYSVINSYIYYRYKYAFI 120
           ++C+++ +  S  ++ +CY  + I + +YY+Y   F+
Sbjct: 557 EICLVSYLQCSECKFAMCYQCATIPNEVYYKYDKHFL 593


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   FLYAQLCIITIIISTLQYVVCYHYSVINSYIYYRYKY 111
           F+  QLC    ++  L+Y+ CY+  +  SY    Y+Y
Sbjct: 557 FMADQLCSQVPMLRNLEYIACYY--ITGSYATQDYEY 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,129
Number of Sequences: 28952
Number of extensions: 213336
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)