Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0201
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    52   6e-08
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.7  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -2

Query: 499 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 323
           + +KYALD+D  +  KIN+  +  L Y Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 220 LASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -3

Query: 450 STTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQTYSCR*IH 271
           ST S SS L  NR Y             +R     ++R  LPS  S   YN   + R IH
Sbjct: 131 STASNSSTLTPNRIYGDR----------NRQDYAQSSRYTLPSLPSSPSYNCPTTLRKIH 180

Query: 270 TVITTNSVYR 241
           T  ++N   R
Sbjct: 181 TNTSSNGTSR 190


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 472 LGPARTSLQLRISVSRARRPLHADAAVQLVRYL 570
           LGPA+ ++Q   SVS A +P +A+A V + + L
Sbjct: 79  LGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVL 111


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -3

Query: 459 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 289
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,902
Number of Sequences: 5004
Number of extensions: 63782
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)