Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0201
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646...    40   0.002
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    37   0.014
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817...    29   5.1  
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967...    29   5.1  
02_05_0468 + 29287867-29287872,29289114-29289156,29289324-292894...    28   6.7  
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    28   8.8  

>01_06_0491 -
           29763738-29764044,29764266-29764474,29764565-29764654,
           29764819-29764905,29765598-29765733,29766036-29766186,
           29766334-29766502
          Length = 382

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = -2

Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 317
           G ++ALD   ++ A+ NN  ++    Q + RP   LTLSA +D +  +    KVG++L L
Sbjct: 322 GMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKAS-KVGLSLVL 380

Query: 316 EP 311
           +P
Sbjct: 381 KP 382


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -2

Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 317
           G ++ALD+  ++ A+ NN  +     Q + RP   +T+S  +D +  +    KVG++L L
Sbjct: 367 GTQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSS-KVGLSLVL 425

Query: 316 EP 311
           +P
Sbjct: 426 KP 427


>08_02_0946 +
           22880399-22880600,22881588-22881650,22881786-22881790,
           22882143-22882253,22882339-22882443,22882529-22882609,
           22883236-22883247,22883680-22883733,22884476-22884586,
           22884789-22884935
          Length = 296

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 273 HTVITTNSVYRESISIVEITCIVPGAFKTQYSFPAF 166
           HT++  +   +++     ITC  PG+F    SF A+
Sbjct: 247 HTIVLGDKSEQKAFKYAGITCFNPGSFANDSSFAAY 282


>01_01_1200 -
           9670109-9670165,9670569-9670664,9670886-9670969,
           9671050-9671118,9671892-9671993,9672807-9672872,
           9673791-9673841,9673953-9674048,9674141-9674279,
           9674343-9674424,9674528-9674723
          Length = 345

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 368
           G  Y L Q   L  KI+   ++    +++L PGV   LSA +D
Sbjct: 288 GYDYMLRQ-CRLRGKIDTNGVVSALLEERLTPGVNFVLSAELD 329


>02_05_0468 +
           29287867-29287872,29289114-29289156,29289324-29289450,
           29289615-29289703,29289794-29289854,29289944-29290011,
           29290099-29290227,29291020-29291126,29291210-29291557,
           29291803-29291883,29291905-29291952,29292331-29292496,
           29292609-29292652
          Length = 438

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 649 AKLFLENFAFCVSNWVCTPT 708
           A L + N + C SNW CT T
Sbjct: 99  AGLIIRNLSICTSNWRCTET 118


>11_01_0221 -
           1720952-1721164,1721351-1721428,1721836-1721895,
           1721996-1722099,1722214-1722372,1722668-1722794,
           1723469-1723636,1723789-1723899,1723989-1724142,
           1724308-1724643,1724753-1724937,1725040-1725138,
           1725275-1725538,1725674-1725850,1726249-1726542,
           1726649-1726816,1727473-1727817,1727901-1728070,
           1728171-1728321,1729193-1729262,1729353-1729537,
           1729896-1729989,1730094-1730212,1730558-1730617,
           1730744-1730830,1732348-1732434,1732622-1732730,
           1732822-1732900,1733067-1733154,1733328-1733392,
           1734287-1734439,1735231-1735337,1735419-1735501,
           1735643-1735733,1735812-1735948,1736118-1736207,
           1736301-1736468,1736875-1737057
          Length = 1805

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 390 LHCLLPSMDRTSMQVA 343
           LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,613
Number of Sequences: 37544
Number of extensions: 412639
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)