Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0201
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                     77   2e-14
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)                 77   2e-14
SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)                    31   0.73 
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   3.0  
SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)                 28   9.0  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = -2

Query: 505 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVA 326
           F  G KY +D+D +L AK+NN S +GL Y Q+LR G+  T+S+ ID +N N GGHK+G++
Sbjct: 315 FQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIKATVSSHIDTKNLNQGGHKLGLS 374

Query: 325 LELE 314
           LE+E
Sbjct: 375 LEME 378



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = -3

Query: 681 TKSKVLQEQLCSRYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADT 508
           +KSK++       Y++ DF +H+ V++   F GSIY ++S  L+    + W  GS++T
Sbjct: 256 SKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAAQLNWATGSSNT 313



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 716 GWVVGVHTQFDTQKAKFSKNNFA 648
           GW  G    +DT K+K   NNF+
Sbjct: 244 GWHAGYQVAYDTSKSKLIANNFS 266


>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
          Length = 187

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/64 (51%), Positives = 47/64 (73%)
 Frame = -2

Query: 505 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVA 326
           F  G KY +D+D +L AK+NN S +GL Y Q+LR G+  T+S+ ID +N N GGHK+G++
Sbjct: 123 FQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIKATVSSHIDTKNLNQGGHKLGLS 182

Query: 325 LELE 314
           LE+E
Sbjct: 183 LEME 186


>SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)
          Length = 666

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 538 ADAAVQLVRYLLVD*TAEIFTIVYVSVESKVTRLVPRAKLFLENFAFCVSNWVCTPTTHP 717
           A+  V +V  LL+D  A++  + + +VE+     V   KL  ENF+    +W  TP T  
Sbjct: 500 AEGQVGVVE-LLIDLGADV-DVGWATVEAAYNGHVEVLKLLRENFSEFDPDWAITPATQS 557

Query: 718 GSL 726
           G+L
Sbjct: 558 GNL 560


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -3

Query: 459 TPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQTYSCR 280
           TPR+TT+P        N+ +  P   L P +  T         +PS   PR      S  
Sbjct: 52  TPRATTTPKKATSETMNFTK--PAGILSPVVLSTQRTFLRTTPIPSTVKPRLTTTNSSTV 109

Query: 279 *IHTVI-TTNSVYRESISIVEIT 214
            + T I  TNS    S++I  I+
Sbjct: 110 TVRTTIGDTNSAKPTSVTIGTIS 132


>SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
 Frame = -3

Query: 570 KVSDKLDCG---VSMKWTAGSADTYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQ 400
           ++  KLD G      +   G+  T S+L+     T +RL T  S T+ SS     ++   
Sbjct: 555 RMGSKLDTGPKQTDSRLLTGANGTDSQLDTGPNQTDSRLDTGPSRTASSS-----KSQCS 609

Query: 399 A*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQTYSCR*IHTVITTNSVYRESIS 229
             PLH      + T M V        NSS      + +C    ++  T S    ++S
Sbjct: 610 RDPLHSSSEDANSTGMLVGITQENERNSSEHSTRNSSNCEGYQSIRRTKSSATATLS 666


>SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 479 GPRRVSARQDQQQVPH---RSWLPTETTPRRNPYI 384
           G  R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 88  GRARYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 122


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 363 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAP 497
           CP  A  +VRV+P RS  W  R +    L+ AC   + S    +P
Sbjct: 171 CPHHAVSSVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP 214



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 363 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAP 497
           CP  A   VRV+P RS  W  R +    L+ AC   + S    +P
Sbjct: 202 CPHHAVSGVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP 245


>SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 470 RVSARQDQQQVPH---RSWLPTETTPRRNPYI 384
           R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 4   RYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 35


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 630 DFALHTNVDNGKDFGGSIYQKV 565
           ++ +H ++  G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415


>SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 474 KTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQ 295
           + R+CT R T +P+       +YA+     C+LP    T  QV  R   PS+     Y Q
Sbjct: 21  RQRVCTTRPTHTPTGAYYQTNSYAK----RCVLPD-HLTRQQV--RTTRPSHMPTGAYYQ 73

Query: 294 T 292
           T
Sbjct: 74  T 74


>SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 497 WSEVRAG--PRRVSARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCP 324
           W E RA   PR      D+ ++       T+ T RR  + V C+  + L     +GWR P
Sbjct: 85  WRESRAPNHPRPDLNTLDESKLEGAWQSGTDLTERRKRHFVSCNTLSRLSLASRRGWRGP 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,048,478
Number of Sequences: 59808
Number of extensions: 491562
Number of successful extensions: 1661
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)