Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0201
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.5  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.5  
U64605-7|AAF98603.1|  296|Caenorhabditis elegans Lamp (lysosome-...    28   7.9  
AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine re...    28   7.9  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/84 (26%), Positives = 42/84 (50%)
 Frame = -3

Query: 681 TKSKVLQEQLCSRYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTYS 502
           + +K+    L   + +  + LH+ V N  DFG S+Y KV+  ++ G  + W  G     +
Sbjct: 160 SSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNVEVGTQLGWKVGG--NGA 217

Query: 501 ELERSTRWTKTRLCTPRSTTSPSS 430
           +   +T++  +R  T R+  + SS
Sbjct: 218 DYALATKYAPSRDLTVRAKVNSSS 241



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = -2

Query: 505 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVA 326
           + +  KYA  +D ++ AK+N+ S + +     L P + LTLS   +    +A  HK G+ 
Sbjct: 219 YALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALKLTLSTQFNLAANDA--HKFGLG 276

Query: 325 LELEP 311
           LE +P
Sbjct: 277 LEFDP 281


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 463 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 311
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 463 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 311
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>U64605-7|AAF98603.1|  296|Caenorhabditis elegans Lamp
           (lysosome-associated membraneprotein) homolog protein 2
           protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 645 RYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSAD 511
           +Y +  + LH + ++  D GGSI+  V     C    K+     D
Sbjct: 150 KYPTQQYYLHVDPNDLSDIGGSIFASVGHSYYCPSEQKYAINDND 194


>AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein93 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 209 IHVISTILIDSLYTLLVVIT--VCIYLQE*VWLYFLG 313
           ++ I TIL+DSLY + +  T  +  +    VW YF G
Sbjct: 229 LNFIQTILLDSLYLIDITFTFELSSWSTRRVWTYFCG 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,191
Number of Sequences: 27780
Number of extensions: 358705
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)