Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0200
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 300 NQTYSCR*IHTVITTNSVYRESISIV 223
           N+ YSC      I   S+Y E IS+V
Sbjct: 187 NEDYSCEYNLVWIKEESIYEERISVV 212



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 354 MQVATRLALPSNSSPRKYNQTYSC 283
           ++   RLA P+N SP  Y    +C
Sbjct: 707 LKSGNRLARPANCSPDLYAVMLNC 730


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = -2

Query: 368  WTELQCRWPQGWRC--PRTRALENITKPTLVDK 276
            W +  C WP+   C    +  +   T P + DK
Sbjct: 2271 WNKDHCDWPENTECHPDASSTMAPSTTPMVPDK 2303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,724
Number of Sequences: 336
Number of extensions: 3381
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)