Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0200
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    55   1e-08
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    32   0.062
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.76 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.1  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   7.1  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   9.4  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   9.4  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = -3

Query: 550 AGVSMKWTAGLG*HLF--EVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSA 377
           AG ++ W A    +    E+ +KYALD+D  +  KIN+  +  L Y Q +RPGVT+ L  
Sbjct: 201 AGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGL 260

Query: 376 AIDGQNFNAGGHKVGVAL 323
            +D Q      HK G++L
Sbjct: 261 QLDTQRLGQPAHKAGLSL 278


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 601 KDFGRVQSTKRYLTSWTAGVSMKWTAGLG*H-LFEVGAKYALDQDASLHAKINNKSLIGL 425
           K  G   +     T   A  ++K T G+G H + EVG +  L Q  +  AK    S+IG 
Sbjct: 206 KKLGATHTINYKKTPQWASPALKMTNGVGYHHVIEVGGEKTLPQSIACLAKDGMISMIGF 265

Query: 424 GYQQKLRPGVTLTLSAAIDGQNFNAGGHKVG 332
              +   P +T ++   I  +N N  G  VG
Sbjct: 266 VASEGTTPNLT-SIIGQILNRNANIRGIFVG 295


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 542 QHEVDGGARLTLIRSWSEVRAGPRRVS--ARQDQQQVPHRSWL 420
           QH VD    L  I  WS ++   RRV+    Q+QQ +P  S L
Sbjct: 93  QHRVDDKKILKTIEKWSCIKEKLRRVANITEQEQQCIPAESSL 135


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -1

Query: 450 STTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQTYSCR*IH 271
           ST S SS L  NR Y             +R     ++R  LPS  S   YN   + R IH
Sbjct: 131 STASNSSTLTPNRIYGDR----------NRQDYAQSSRYTLPSLPSSPSYNCPTTLRKIH 180

Query: 270 TVITTNSVYR 241
           T  ++N   R
Sbjct: 181 TNTSSNGTSR 190


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -1

Query: 459 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 289
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 581 LNPPEIFTIVYVSVEEQ 631
           L PP++FT  Y+S+ E+
Sbjct: 127 LEPPDVFTPEYISISEE 143


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = -2

Query: 524 GARLTLIRSWSEVRAGPRRVSARQDQQQVPHRSWLPTETTPRRNPYIV 381
           G+    IR W   +  P   + R+  + +    W P    P   PY++
Sbjct: 195 GSMDNTIRFWDPKKGSPIGDALRRHTKPIMALCWQPLHLAPDSGPYLL 242


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 503 RSWSEVRAGPRRVSARQDQQQVPHR 429
           R WSE+  G ++    +D+ +VP +
Sbjct: 534 RKWSEINDGLQQKKEEEDEDEVPSK 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,879
Number of Sequences: 5004
Number of extensions: 56522
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)