Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0200
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 40 0.002
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 37 0.012
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817... 29 4.2
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 29 4.2
11_06_0065 - 19736265-19737302 28 7.4
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 7.4
04_03_0191 - 12452369-12452499,12452875-12453077,12453641-124538... 28 7.4
01_01_0098 + 744582-745380,746107-746130,746500-747569 27 9.7
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = -3
Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 317
G ++ALD ++ A+ NN ++ Q + RP LTLSA +D + + KVG++L L
Sbjct: 322 GMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKAS-KVGLSLVL 380
Query: 316 EP 311
+P
Sbjct: 381 KP 382
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = -3
Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 317
G ++ALD+ ++ A+ NN + Q + RP +T+S +D + + KVG++L L
Sbjct: 367 GTQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSS-KVGLSLVL 425
Query: 316 EP 311
+P
Sbjct: 426 KP 427
>08_02_0946 +
22880399-22880600,22881588-22881650,22881786-22881790,
22882143-22882253,22882339-22882443,22882529-22882609,
22883236-22883247,22883680-22883733,22884476-22884586,
22884789-22884935
Length = 296
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 273 HTVITTNSVYRESISIVEITCIVPGAFKTQYSFPAF 166
HT++ + +++ ITC PG+F SF A+
Sbjct: 247 HTIVLGDKSEQKAFKYAGITCFNPGSFANDSSFAAY 282
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 496 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 368
G Y L Q L KI+ ++ +++L PGV LSA +D
Sbjct: 288 GYDYMLRQ-CRLRGKIDTNGVVSALLEERLTPGVNFVLSAELD 329
>11_06_0065 - 19736265-19737302
Length = 345
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -2
Query: 563 DKLDCGRQHEVDGGARLTLIRSWSEVRAGPRRVSARQDQQQVPHRSWL-PTETTPRRN 393
D DC HE DGG W RA RVSA +VP S + + P R+
Sbjct: 263 DDDDCCYHHESDGGELAPAAAYWEAQRAELTRVSA-MVASEVPSSSRIGAADVRPERD 319
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 390 LHCLLPSMDRTSMQVA 343
LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737
>04_03_0191 -
12452369-12452499,12452875-12453077,12453641-12453835,
12454301-12454809
Length = 345
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 509 VSAEPRRPLHADARSPACQIPFGRLNPPE 595
V+ EP RP P C FGR NP E
Sbjct: 153 VAPEPERPRFRCRCRPRCDYAFGRGNPTE 181
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 453 RSTTSPSSVLVTNRNYAQA*PLHCLLPS 370
R TTS S LV+ R Y A PL C++ S
Sbjct: 173 RDTTSHFSYLVSTRLYLYALPLDCMVVS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,729,298
Number of Sequences: 37544
Number of extensions: 376422
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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