Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0200
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)                 83   1e-16
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                     82   4e-16
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           33   0.20 
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)                 28   5.7  
SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   9.9  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
          Length = 187

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 39/96 (40%), Positives = 58/96 (60%)
 Frame = -3

Query: 601 KDFGRVQSTKRYLTSWTAGVSMKWTAGLG*HLFEVGAKYALDQDASLHAKINNKSLIGLG 422
           + FGR+    + L        + W  G     F+ G KY +D+D +L AK+NN S +GL 
Sbjct: 94  ESFGRLGEISKNLE---VAAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLA 150

Query: 421 YQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELE 314
           Y Q+LR G+  T+S+ ID +N N GGHK+G++LE+E
Sbjct: 151 YTQRLRDGIKATVSSHIDTKNLNQGGHKLGLSLEME 186


>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = -3

Query: 538 MKWTAGLG*HLFEVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQN 359
           + W  G     F+ G KY +D+D +L AK+NN S +GL Y Q+LR G+  T+S+ ID +N
Sbjct: 304 LNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGLAYTQRLRDGIKATVSSHIDTKN 363

Query: 358 FNAGGHKVGVALELE 314
            N GGHK+G++LE+E
Sbjct: 364 LNQGGHKLGLSLEME 378


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 363 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFA-PTSNKCQPSPAVHFM 539
           CP  A   VRV+P RS  W  R +    L+ AC   + S    + P S  C   P   ++
Sbjct: 202 CPHHAVSGVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSPPRSIWCSRVPTTQYL 260

Query: 540 LTP 548
            +P
Sbjct: 261 YSP 263



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 363 CPSMAADNVRVTPGRSFCW*PRPMRDLLLILACRDASWSSAYFAP 497
           CP  A  +VRV+P RS  W  R +    L+ AC   + S    +P
Sbjct: 171 CPHHAVSSVRVSPPRSI-WCSRVLTTQYLVFACPHHAVSGVRVSP 214


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -1

Query: 459 TPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQTYSCR 280
           TPR+TT+P        N+ +  P   L P +  T         +PS   PR      S  
Sbjct: 52  TPRATTTPKKATSETMNFTK--PAGILSPVVLSTQRTFLRTTPIPSTVKPRLTTTNSSTV 109

Query: 279 *IHTVI-TTNSVYRESISIVEIT 214
            + T I  TNS    S++I  I+
Sbjct: 110 TVRTTIGDTNSAKPTSVTIGTIS 132


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 477  SSAYFAPTSNKCQPSPAVHF---MLTPAVQLV 563
            S A+   TSN+  P+ AVHF   + TPAVQL+
Sbjct: 969  SDAFPGGTSNRYDPNDAVHFPDKVFTPAVQLL 1000


>SB_14840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 479 GPRRVSARQDQQQVPH---RSWLPTETTPRRNPYI 384
           G  R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 88  GRARYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 122


>SB_8824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 470 RVSARQDQQQVPH---RSWLPTETTPRRNPYI 384
           R    Q Q Q+PH   +S +PT T P  NP++
Sbjct: 4   RYHGGQSQSQIPHGQRKSQIPTWTAPEPNPHV 35


>SB_44111| Best HMM Match : OAD_gamma (HMM E-Value=4.4)
          Length = 305

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 518 RLTLIRSWSEVRAG--PRRVSARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTELQCRW 345
           +L +   W E RA   PR      D+ ++       T+ T RR  + V C+  + L    
Sbjct: 78  KLLMNLHWRESRAPNHPRPDLNTLDESKLEGAWQSGTDLTERRKRHFVSCNTLSRLSLAS 137

Query: 344 PQGWRCP 324
            +GWR P
Sbjct: 138 RRGWRGP 144


>SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -1

Query: 474 KTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNQ 295
           + R+CT R T +P+       +YA+     C+LP    T  QV  R   PS+     Y Q
Sbjct: 21  RQRVCTTRPTHTPTGAYYQTNSYAK----RCVLPD-HLTRQQV--RTTRPSHMPTGAYYQ 73

Query: 294 T 292
           T
Sbjct: 74  T 74


>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 137 LMK*SHSVIRKAGKEYCVLNAPGTIHVISTILIDSLYTLLVVITVCI 277
           L + +HS +RK G   CV     +   +  I I SL  + V+ T+CI
Sbjct: 49  LKRYAHSFLRKRGGRRCVNRRCRSKFNLLAICIISLVLIYVMCTLCI 95


>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 158

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 497 WSEVRAGPRRVSARQDQQQVPHRSWLPTETTPRRNP 390
           +SE+  GP+    RQ  +Q   R W   ET   +NP
Sbjct: 27  YSEIDFGPKVTLLRQKLKQHIGRDWTKEETVYSKNP 62


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 510 TYSKLERSTRWTKTRLCTPRSTTSPSSVLVTN-RNYAQA*PLHC 382
           TY  L++ T  T+ ++    +T    SVL  N  N A A P HC
Sbjct: 297 TYGVLDKMTLKTEVKIKNDAATAGGCSVLEVNVSNTADAEPEHC 340


>SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = -2

Query: 536 EVDGGARLTLIRSWSEVRAGPRRVSARQDQQQVPHRSWLPTETTPRRNPYIVCCHRWTEL 357
           ++  G R +++RSW+E+    R  S+++      +  W  +E       Y++    W   
Sbjct: 109 DLSAGER-SMVRSWAEISVILRPRSSQRTYPSEIYSIWRHSEKKIMEEQYLIKWKDWPLQ 167

Query: 356 QCRW 345
            C W
Sbjct: 168 FCSW 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,503,169
Number of Sequences: 59808
Number of extensions: 431206
Number of successful extensions: 1096
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)