Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0200
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15090.1 68418.m01768 porin, putative / voltage-dependent ani...    40   0.001
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    38   0.006
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    33   0.16 
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    28   4.7  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    27   8.1  
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing...    27   8.1  
At2g27770.1 68415.m03365 expressed protein                             27   8.1  

>At5g15090.1 68418.m01768 porin, putative / voltage-dependent
           anion-selective channel protein, putative similar to
           SP|P42055 34 kDa outer mitochondrial membrane protein
           porin (Voltage-dependent anion-selective channel
           protein) (VDAC) {Solanum tuberosum}; contains Pfam
           profile PF01459: Eukaryotic porin; identical to cDNA
           voltage-dependent anion-selective channel protein
           GI:4006940
          Length = 274

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -3

Query: 499 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 320
           VG ++ALD   ++ A++NN  +     Q + RP    T+S  +D +  +    KVG+AL 
Sbjct: 213 VGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSA-KVGIALA 271

Query: 319 LEP 311
           L+P
Sbjct: 272 LKP 274


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -3

Query: 499 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 320
           VG  YA+D   ++ AK+NN   +G   Q ++ P   +T+S+ ID +       + G++L 
Sbjct: 215 VGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEK-HPRFGLSLA 273

Query: 319 LEP 311
           L+P
Sbjct: 274 LKP 276


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -3

Query: 499 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 320
           VG  YA+D   ++ AK+N+    G   Q +  P   +T+S  ID +  +    ++G++L 
Sbjct: 165 VGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDK-YPRLGLSLS 223

Query: 319 LEP 311
           L+P
Sbjct: 224 LKP 226


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 471 TRLCTPRSTTSPSSVLVTNRN 409
           TR+  P  ++SPSSVL+TN N
Sbjct: 514 TRILPPSVSSSPSSVLLTNSN 534


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
            profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 344  PQGWRCPRTRALENITKPTLVDKYILLSQPTACIEN 237
            P GW CP T  LE+  K  L+ K  L +   +  EN
Sbjct: 1429 PIGWPCPETMLLEDNRKECLMVKRYLPNLDWSSAEN 1464


>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
           protein similar to SP|O00623 Peroxisome assembly protein
           12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
           {Homo sapiens}; contains Pfam profile PF04757: Pex2 /
           Pex12 amino terminal region
          Length = 393

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 273 VFIYKSRFGYIF*GSSSRATPTLWPPALKF-CPSMAADNVRVTPGRSFC 416
           VFI+K    +        + PT++PP      P MA + + + P RS C
Sbjct: 291 VFIFKMMEWWYQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLC 339


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 178 LSCFPNNAVRLFH*LFLNVCKRFASKYSLTRLLINKS 68
           +SCF  N++ + H L ++      SKYS   + I+ S
Sbjct: 5   VSCFSENSINVTHPLSISSSSSSCSKYSTNNVCISPS 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,679
Number of Sequences: 28952
Number of extensions: 295775
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)