Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 319 GRACHFLRKPGFVNTLEIC 263
           GR   + + PGF+   EIC
Sbjct: 442 GREGFYTQNPGFLAYFEIC 460



 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 319  GRACHFLRKPGFVNTLEICMN 257
            G+A  + R  GF+   EIC N
Sbjct: 1665 GQAGEYTRAAGFLAYYEICHN 1685



 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 319  GRACHFLRKPGFVNTLEIC 263
            G A  F R  GF+   EIC
Sbjct: 2588 GEAGEFTRAGGFLAYYEIC 2606


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 385 LSSSLIIGVQATYIFDLKIR 326
           LS+ + I VQA   FD+K+R
Sbjct: 785 LSAVIQISVQAPPQFDIKLR 804


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,641
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)