Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   2.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   3.5  
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    25   4.6  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 321 NSLIFKSNMYVAWTPI 368
           N L+ K NMY AW P+
Sbjct: 357 NKLLNKDNMYTAWIPL 372


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 40  PGLVTYDGAVRRVFNKKLGFSRVLLKLTLLCSSRDQLKDFSLEQLIRSL 186
           PGL     AV+ VF+K L          L+C S D   DF L+ L  +L
Sbjct: 119 PGLTGVQVAVKDVFSKSLQL------YLLVCPSEDIKNDFLLDSLKHAL 161


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 100 RSPVFC*KLCAQLHHMSLAPAKTKHFQYI 14
           RSP F   L  QLH ++L+  K+KH Q I
Sbjct: 283 RSPYFLDSL--QLHAINLSAIKSKHLQKI 309


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 258 TACNRARAYFFSLKVISSE 202
           T C+  RAYFF L++ S++
Sbjct: 72  TKCDNNRAYFFQLQIRSAD 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,806
Number of Sequences: 5004
Number of extensions: 32539
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)