Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)               27   4.5  
SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_40327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 212 FHLNDNTPYSDLMSCSKLKSFN 147
           F++ DN P+  L  CSK+K F+
Sbjct: 9   FNVCDNAPFEVLKKCSKMKKFH 30


>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 191 GCCHSDEITFKEKKYARALLQAVHANFQRIHKSRLS*KV 307
           GC  S E+ +KEKK    L Q +  N Q I+ SR+  +V
Sbjct: 64  GCIASPELIYKEKK--TRLTQRIFRNGQYINVSRVGSRV 100


>SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)
          Length = 285

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 191 GCCHSDEITFKEKKYARALLQAVHANFQRIHKSRLS*KV 307
           GC  S E+ +KEKK    L Q +  N Q I+ SR+  +V
Sbjct: 15  GCIASPELIYKEKK--TRLTQRIFRNGQYINVSRVGSRV 51


>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 112 LKLTLLCSSRDQLKDFSLEQLIRS 183
           L   LLC S D+LK F +++++++
Sbjct: 35  LSSNLLCGSCDELKQFKMDEIVKN 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,183
Number of Sequences: 59808
Number of extensions: 228560
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)