Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein prot...    55   1e-09
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   1.4  
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    24   1.9  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   3.3  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   4.3  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   4.3  

>AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein
           protein.
          Length = 163

 Score = 54.8 bits (126), Expect = 1e-09
 Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179 DHCKGCCHSD-EITFKEKKYARALLQAVHANFQRIHKSRLS*KVTGPAKFPNLQIKYVRG 355
           +HC  CC  D E   K K Y  A+L+     F    + +   K   PAKFPNL IKYVRG
Sbjct: 54  EHCLECCQKDTEADSKLKVYPAAVLEVCTCKFGAYPQIQAFIKSDRPAKFPNLTIKYVRG 113

Query: 356 LDP 364
           LDP
Sbjct: 114 LDP 116


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 67  QLHHMSLAPAKTK 29
           Q HH+ LAPAKT+
Sbjct: 709 QQHHLELAPAKTE 721


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 113 NRTLEKPSFLLKTLRTAPSYVTSPG*NETLPIH 15
           N TL K   L  TLR A    T PG    +P H
Sbjct: 371 NETLRKYPPLETTLRVAGQDYTIPGTRHVIPRH 403


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 61  HHMSLAPAKTK 29
           HH+ LAPAKT+
Sbjct: 692 HHLELAPAKTE 702


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +2

Query: 182 HCKGCCHSDEITFKEKKY----ARALLQAVHANFQRIHKSRLS*KVTGPAKFPNLQI 340
           HC G  H D + F  +K+    A+ L+ A  A + +  K   +    GP K PN+ I
Sbjct: 24  HCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAY-KAGKIAPNPFTAGPPK-PNISI 78


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 KFPAYSQIQAFVKSDRPGQIP*SSN 339
           +FPA+ +IQ  V   +PG+ P  S+
Sbjct: 484 EFPAHWKIQRLVLLQKPGKPPGESS 508


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,814
Number of Sequences: 2352
Number of extensions: 7942
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 33349914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)