Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    33   0.081
AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical ...    27   7.0  
U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 121 TLLCSSRDQLKDFSLEQLIRSL*GVLSFR*NHFQRKEIRSSPITSCSCKFPAYSQIQAFV 300
           TL C   ++L D+ LE L+         +   F+ ++  ++ +  C C    + Q+QAFV
Sbjct: 38  TLKCGLCERLSDYHLETLLTDCLQCC-IKEEEFKHEKYPTAILEVCECNLARFPQVQAFV 96

Query: 301 KSDRPGQ 321
             D   Q
Sbjct: 97  HKDMARQ 103


>AF024499-6|AAB70354.1|  560|Caenorhabditis elegans Hypothetical
           protein F42G2.2 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 204 QMKSLSKKRNTLEPYYKLFMQISSV 278
           Q+KSLS+K+    P Y L++QI  V
Sbjct: 120 QIKSLSQKQQKGVPVYTLYLQIDHV 144


>U42439-6|AAA83510.1|  266|Caenorhabditis elegans Hypothetical
           protein F19C7.1 protein.
          Length = 266

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 197 CHSDEITFKEKKYARALLQAVHANFQRIHKSRLS*KVTGPAKFPNLQIKYVRGL 358
           C +   T  E+K     +++ + N+Q+   + ++  +T  A+ PN   KY + L
Sbjct: 122 CGAGFWTMYERKTLTTCVESTYVNYQQETSAAMNTYMTATAQDPNGACKYAQNL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,708
Number of Sequences: 27780
Number of extensions: 170078
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)