Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0196
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18660.1 68418.m02215 isoflavone reductase-related low simila...    33   0.057
At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family pr...    27   3.7  
At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G...    27   3.7  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    26   8.6  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    26   8.6  

>At5g18660.1 68418.m02215 isoflavone reductase-related low
           similarity to SP|P52575 Isoflavone reductase (EC
           1.3.1.-) (IFR) {Medicago sativa}
          Length = 417

 Score = 33.5 bits (73), Expect = 0.057
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 213 SLSKKRNTLEPYYKLFMQISSVFTNPGFRKK*QARPNSLIFKSNMYVAWTPIIKLLDKGW 392
           SL  KR  L+P   L   IS + T+P FR K     N L+  S  Y+    + +++ +G+
Sbjct: 49  SLKYKRARLKPISSLDSGISEIATSPSFRNKSPKDINVLVVGSTGYIGRFVVKEMIKRGF 108

Query: 393 H 395
           +
Sbjct: 109 N 109


>At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 353

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 58  DGAVRRVFNKKLGFSRVLLKLTLLCSSRDQLKDFSLEQL 174
           DGAV+ V  K+ GF  +L ++  L +S D+     +EQ+
Sbjct: 171 DGAVKLVDLKESGFYHILHRIGFLKASSDEALFMDVEQM 209


>At3g27300.1 68416.m03412 glucose-6-phosphate 1-dehydrogenase / G6PD
           (ACG9) identical to glucose-6-phosphate 1-dehydrogenase
           (acg9) [Arabidopsis thaliana] GI:5732195
          Length = 516

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 186 VRGVVIQMKSLSKKRNTLEPYYKLFMQISSVF-TNPGFRK 302
           +RG ++  K+ SKK   L  + KL   +S  + +  GF++
Sbjct: 85  IRGYLVDEKNASKKTEALSKFLKLIKYVSGPYDSEEGFKR 124


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 320 WPGLSLFTKAWICEYAGNLHEQLVIGL-ERISFL*K*F-HLNDNTP 189
           WPG  +   +W C      H  L + L ER+  +   F HL D  P
Sbjct: 165 WPGSEVLKSSWTCPEGYCPHFNLSVPLEERVDSVLSHFDHLEDEVP 210


>At1g03060.1 68414.m00280 WD-40 repeat family protein /
           beige-related similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; Similar to gb|U70015 lysosomal trafficking
           regulator from Mus musculus and contains 2 Pfam PF00400
           WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
           come from this gene
          Length = 3601

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 46  LVTYDGAVRRVFNKKLGFSRVLLKLTLLCSSRDQLKDFSLEQLIR 180
           +V  +G+ +RVF +  GFS +L  L      R+ + +  L   I+
Sbjct: 788 IVGVNGSAQRVFGEATGFSLLLTTLHTFQGKREHMDESDLTVYIK 832


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,522,152
Number of Sequences: 28952
Number of extensions: 158021
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)